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View Structure Prediction Details

Protein: NMD4
Organism: Saccharomyces cerevisiae
Length: 218 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NMD4.

Description E-value Query
Range
Subject
Range
NMD4_YEAST - Nonsense-mediated decay protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NMD4 P...
NMD4 - Protein interacting with Nam7p, may be involved in the nonsense-mediated mRNA decay pathway
0.0 [1..218] [1..218]

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Predicted Domain #1
Region A:
Residues: [1-218]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQYNFIIDA SAFEKGLGNI KRWCSDCTEA VTLNFYIPTF TLNELDFLQQ RRKSFAARES  60
   61 LKFIDRLDDS KFANLKVFIE FPEVLDIILW SDVMEHNDSS GKINIAKLPK RLKNLLKSCI 120
  121 YKCYLEGNEG LHWFLISEDP QIREMAMQCN IPSCSIVDVD SILSKDMNDK SFRESEKFNN 180
  181 MMLKNGTKEE SENGREIIRT NFNKTVYASR GTGELWSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle