YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG33
Organism:	Saccharomyces cerevisiae
Length:	197 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG33.

Description	E-value	Query Range	Subject Range
gi\|190406926 - gi\|190406926\|gb\|EDV10193.1\| protein SCM4 [Saccharomyces cerevisiae RM11-1a] SCM4_YEAST - Protein SCM4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCM4 PE=1 SV=1 gi\|151943331 - gi\|151943331\|gb\|EDN61644.1\| suppressor of cdc4 mutation [Saccharomyces cerevisiae YJM789] SCM4 - Potential regulatory effector of CDC4 function, suppresses a temperature-sensitive allele of CDC4, t...	211.0	[0..1]	[113..1]
gi\|49527723\|emb\|... - unnamed protein product [Candida glabrata CBS 138] gi\|50291957, gi\|... - gi\|50291957\|ref\|XP_448411.1\| unnamed protein product [Candida glabrata], gi\|49527723\|emb\|CAG61372.1\|...	109.0	[0..8]	[117..10]
gi\|45190323, gi\|... - gi\|45190323\|ref\|NP_984577.1\| AEL283Cp [Ashbya gossypii ATCC 10895], gi\|44983219\|gb\|AAS52401.1\| AEL28... gi\|44983219 - gi\|44983219\|gb\|AAS52401.1\| AEL283Cp [Ashbya gossypii ATCC 10895]	66.0	[0..1]	[143..1]
gi\|49640250 - gi\|49640250\|emb\|CAH02707.1\| KLLA0A02695p [Kluyveromyces lactis] gi\|50302369, gi\|... - gi\|50302369\|ref\|XP_451119.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640250\|emb\|CAH0270...	59.0	[0..1]	[171..1]
gi\|42545742, gi\|... - gi\|46107332\|ref\|XP_380725.1\| hypothetical protein FG00549.1 [Gibberella zeae PH-1], gi\|42545742\|gb\|E...	59.0	[0..4]	[194..7]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVCLAITKG IAVSSIGLYS GLLASASLIT STTPLEVLTG SLTPTLTTLK NAATALGAFA  60
   61 STFFCVSFFG APPSLRHPYL LYGMLVAPLS SFVLGCASNY QSRKYSKVSK ESSLFPEDSK 120
  121 LAASELSDSI IDLGEDNHAS ENTPRDGKPA ATTVSKPAEA LHTGPPIHTK NLIAATAIAI 180
  181 VGFVQAVIGV YGEGQFI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits