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View Structure Prediction Details

Protein: YLR352W
Organism: Saccharomyces cerevisiae
Length: 807 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR352W.

Description E-value Query
Range
Subject
Range
YL352_YEAST - F-box protein YLR352W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR352W PE=1 SV=1
YLR352W - Putative protein of unknown function with similarity to F-box proteins; interacts with Skp1p and Cdc...
0.0 [1..807] [1..807]
gi|18376084 - gi|18376084|emb|CAD21111.1| conserved hypothetical protein [Neurospora crassa]
0.0 [18..511] [181..611]

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Predicted Domain #1
Region A:
Residues: [1-606]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDLKSKTLS SQSLGAAIPP EIVYQILTYQ FRDLLRNDHP GTAEKFNENL TTFVKSNLTV  60
   61 NKTFSHICQV LIYRYCNLTT AKRFHGLLQT LKGNRCLCNK IEVADFQELT SIGLGRSSEM 120
  121 NKMIKNLTNE TLLEFLMLTK ANLREFLACE NIQDDLDDNI IKYILSPGKV LSVVDFCGCS 180
  181 GTTFTESFIK ALDKYYPNKS IDQYRLEPIQ QNYQITCLGL NDCIDLPSHV LWKILKMLPE 240
  241 LQKLDLSHTS IDDSTLYHGI PHWKNLTHLS LATCLQVTPR AVLEFFSHHP TITDPDNTST 300
  301 LEWLNVSVIA HSSSWNEVHT MFLLKKLCQH GHNKTLQYLN IGGLPLHVAP SFGEDPISES 360
  361 TYYYQCRDSL QFIKWNFPKL KSLSIKGNSI PISTLVEFLT PIDQDHPNCA QKLKFLNISG 420
  421 NSYVNKWTIQ DSLLYTCSPS LVALEVSFDS WQQIEKLNDR HEIIAYRYKN PNSVIKDIST 480
  481 AEQVKWKCYI DSSYGRRYWL YKTDPFLNRD DLDSKSNLTR YDFEGHKIIE IINQPDFLKF 540
  541 AQSKIMLGCG LVPQSGIRRK LCYRDLKPPV SQFLNRKGAI SLGDTPLPII TPTLPRGGWR 600
  601 IIHNED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [607-807]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNNSHVEDSQ NHVNAIPRRN SLLSRPTLRS NNGSSSANPF AINVSPASQI RDGLYWDRSV  60
   61 HDLRELSLQE QRIQELADEQ QELRTIANFE ETDDEYLHDP DLQRRRSQLH LFESSRSRSG 120
  121 NKTRPSLTGE HSSSASFLSF SHFNHLHKRK NYYFTHPDEF VYDPKDPLTT QRYRLHFEIV 180
  181 NEYQVFGCIE RGMYRYYSLK A

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle