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View Structure Prediction Details

Protein: RPS25B
Organism: Saccharomyces cerevisiae
Length: 108 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS25B.

Description E-value Query
Range
Subject
Range
gi|109075654, gi... - gi|109108908|ref|XP_001100935.1| PREDICTED: similar to 40S ribosomal protein S25 [Macaca mulatta], g...
ENSOCUP000000148... - pep:novel scaffold:oryCun2:GL018823:491762:493564:-1 gene:ENSOCUG00000017256 transcript:ENSOCUT00000...
RS25_MOUSE - 40S ribosomal protein S25 OS=Mus musculus GN=Rps25 PE=1 SV=1
RS25_BOVIN - 40S ribosomal protein S25 OS=Bos taurus GN=RPS25 PE=2 SV=1
gi|217038883 - gi|217038883|gb|ACJ76798.1| ribosomal protein S25 [Ailuropoda melanoleuca]
gi|123992117, gi... - gi|60655861|gb|AAX32494.1| ribosomal protein S25 [synthetic construct], gi|123999452|gb|ABM87284.1| ...
gi|149716588 - gi|149716588|ref|XP_001503113.1| PREDICTED: similar to mCG10725 [Equus caballus]
ENSCJAT000000442... - null, null
RS25_SHEEP - 40S ribosomal protein S25 OS=Ovis aries GN=RPS25 PE=2 SV=1
gi|197129813, gi... - gi|224083044|ref|XP_002188281.1| PREDICTED: putative 40S ribosomal protein S25 variant 1 [Taeniopygi...
RPS25 - ribosomal protein S25
gi|55637069 - gi|55637069|ref|XP_508801.1| PREDICTED: similar to ribosomal protein S25 [Pan troglodytes]
RS25_RAT - 40S ribosomal protein S25 OS=Rattus norvegicus GN=Rps25 PE=2 SV=1
gi|90075214 - gi|90075214|dbj|BAE87287.1| unnamed protein product [Macaca fascicularis]
gi|542174986|ref... - PREDICTED: 40S ribosomal protein S25 [Zonotrichia albicollis]
2.0E-28 [1..107] [1..115]
gi|15227183, gi|... - gi|4544393|gb|AAD22303.1| 40S ribosomal protein S25 [Arabidopsis thaliana], pir||D84539 40S ribosoma...
3.0E-27 [22..105] [39..122]
RS25_SOLLC - 40S ribosomal protein S25 OS=Solanum lycopersicum GN=RPS25 PE=3 SV=1
1.0E-24 [2..105] [3..106]
gi|157870648 - gi|157870648|ref|XP_001683874.1| ribosomal protein S25 [Leishmania major]
gi|146088810, gi... - gi|146098641|ref|XP_001468433.1| ribosomal protein S25 [Leishmania infantum], gi|146088810|ref|XP_00...
gi|68126941 - gi|68126941|emb|CAJ05186.1| ribosomal protein S25 [Leishmania major]
RS25_LEIIN - 40S ribosomal protein S25 OS=Leishmania infantum GN=RPS25 PE=2 SV=1
2.0E-24 [1..103] [1..103]
RS25_SPOFR - 40S ribosomal protein S25 OS=Spodoptera frugiperda GN=RpS25 PE=3 SV=1
4.0E-24 [1..108] [1..115]
gi|4409 - gi|4409|emb|CAA26797.1| ribosomal protein S31 precursor [Saccharomyces pastorianus]
Sbay_7.307, Sbay... - probable YGR027C RPS25A (72736-73062), null
ORFP:8300 - YGR027C, Contig c9 3761-4087
RPS25A - Protein component of the small (40S) ribosomal subunit; nearly identical to Rps25Bp and has similari...
gi|207345216 - gi|207345216|gb|EDZ72107.1| YGR027Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190406947 - gi|190406947|gb|EDV10214.1| ribosomal protein S25A [Saccharomyces cerevisiae RM11-1a]
RS25A_YEAST - 40S ribosomal protein S25-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS25A PE=1 ...
gi|151943310 - gi|151943310|gb|EDN61623.1| ribosomal protein S25A [Saccharomyces cerevisiae YJM789]
7.0E-24 [1..108] [1..108]
rps-25 - ribosomal protein status:Confirmed UniProt:P52821 protein_id:AAK39246.1
1.0E-23 [1..106] [1..110]

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Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKQQLSKA AKAAAALAGG KKSKKKWSKK SMKDRAQHAV ILDQEKYDRI LKEVPTYRYV  60
   61 SVSVLVDRLK IGGSLARIAL RHLEKEGIIK PISKHSKQAI YTRAAASE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 64.60206
Match: PF03297
Description: S25 ribosomal protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle