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View Structure Prediction Details

Protein: RPL38
Organism: Saccharomyces cerevisiae
Length: 78 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL38.

Description E-value Query
Range
Subject
Range
gi|76646012 - gi|76646012|ref|XP_872162.1| PREDICTED: similar to 60S ribosomal protein L38, partial [Bos taurus]
132.0 [0..1] [78..410]
gi|50808293 - gi|50808293|ref|XP_428957.1| PREDICTED: similar to G protein-coupled receptor 142, partial [Gallus g...
118.0 [0..2] [71..42]
gi|115313002 - gi|115313002|gb|AAI24070.1| Zgc:152655 protein [Danio rerio]
108.0 [0..14] [78..186]
gi|109117614 - gi|109117614|ref|XP_001089804.1| PREDICTED: similar to 60S ribosomal protein L38 [Macaca mulatta]
101.0 [0..2] [78..129]
gi|50931949, gi|... - gi|50931949|ref|XP_475502.1| putative 60S ribosomal protein L38 [Oryza sativa (japonica cultivar-gro...
100.0 [0..1] [78..1]
RL38_ARATH - 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1
99.0 [0..1] [78..1]
gi|77745467 - gi|77745467|gb|ABB02632.1| ribosomal protein L38-like [Solanum tuberosum]
RL38_SOLLC - 60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1
99.0 [0..1] [78..1]
rpl3802 - 60S ribosomal protein L38
RL38B_SCHPO - 60S ribosomal protein L38-2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3802 PE=3 S...
97.0 [0..1] [78..1]
gi|111307831 - gi|111307831|gb|AAI21347.1| LOC548667 protein [Xenopus tropicalis]
96.0 [0..17] [78..366]

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Predicted Domain #1
Region A:
Residues: [1-78]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAREITDIKQ FLELTRRADV KTATVKINKK LNKAGKPFRQ TKFKVRGSSS LYTLVINDAG  60
   61 KAKKLIQSLP PTLKVNRL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 54.60206
Match: PF01781.9
Description: No description for PF01781.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.858 N/A N/A c.47.2 RNA 3'-terminal phosphate cyclase, RPTC, insert domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle