YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR281C
Organism:	Saccharomyces cerevisiae
Length:	155 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR281C.

Description	E-value	Query Range	Subject Range
RF1_CHLTR - Peptide chain release factor 1 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=prfA PE=3 SV=1 gi\|255310824 - gi\|255310824\|ref\|ZP_05353394.1\| peptide chain release factor 1 [Chlamydia trachomatis 6276] RF1_CHLTA - Peptide chain release factor 1 OS=Chlamydia trachomatis serovar A (strain ATCC VR-571B / DSM 19440 /... gi\|255317124 - gi\|255317124\|ref\|ZP_05358370.1\| peptide chain release factor 1 [Chlamydia trachomatis 6276s] RF1_CHLTR - Peptide chain release factor 1 OS=Chlamydia trachomatis GN=prfA PE=3 SV=1	3.0E-51	[6..153]	[192..327]
RF1_HAEIN - (P43917) Peptide chain release factor 1 (RF-1) gi\|148716243, gi... - gi\|148826083\|ref\|YP_001290836.1\| peptide chain release factor 1 [Haemophilus influenzae PittEE], gi\|... gi\|144982593, gi... - gi\|145642039\|ref\|ZP_01797610.1\| peptide chain release factor 1 [Haemophilus influenzae R3021], gi\|14... gi\|145637543, gi... - gi\|145637543\|ref\|ZP_01793200.1\| peptide chain release factor 1 [Haemophilus influenzae PittHH], gi\|1... gi\|145631803, gi... - gi\|145642039\|ref\|ZP_01797610.1\| peptide chain release factor 1 [Haemophilus influenzae R3021], gi\|14... gi\|16273461, gi\|... - gi\|16273461\|ref\|NP_439710.1\| peptide chain release factor 1 [Haemophilus influenzae Rd KW20], gi\|157... gi\|229809952, gi... - gi\|229847123\|ref\|ZP_04467228.1\| peptide chain release factor 1 [Haemophilus influenzae 7P49H1], gi\|2... gi\|229844233, gi... - gi\|229844233\|ref\|ZP_04464374.1\| peptide chain release factor 1 [Haemophilus influenzae 6P18H1], gi\|2...	4.0E-51	[5..154]	[193..329]
RF1_PASMU - Peptide chain release factor 1 OS=Pasteurella multocida (strain Pm70) GN=prfA PE=3 SV=1 RF1_PASMU - Peptide chain release factor 1 OS=Pasteurella multocida GN=prfA PE=3 SV=1	4.0E-51	[5..154]	[192..328]
RF1_CHLMU - Peptide chain release factor 1 OS=Chlamydia muridarum GN=prfA PE=3 SV=1 RF1_CHLMU - Peptide chain release factor 1 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=prfA PE=3 SV=1	1.0E-50	[6..153]	[192..327]
gi\|11277793 - pir\|\|G81822 translation releasing factor RF-1 prfA NMA1945 [similarity] - Neisseria meningitidis (st... RF1_NEIMA - Peptide chain release factor 1 OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN... RF1_NEIMA - Peptide chain release factor 1 OS=Neisseria meningitidis serogroup A GN=prfA PE=3 SV=1	1.0E-50	[5..154]	[192..328]
RF1_NEIMB - Peptide chain release factor 1 OS=Neisseria meningitidis serogroup B GN=prfA PE=3 SV=1 gi\|11277796 - pir\|\|G81053 translation releasing factor RF-1 NMB1686 [similarity] - Neisseria meningitidis (strain ... RF1_NEIMB - Peptide chain release factor 1 OS=Neisseria meningitidis serogroup B (strain MC58) GN=prfA PE=3 SV=1	2.0E-50	[5..154]	[192..328]
gi\|15926431, gi\|... - gi\|15926431\|ref\|NP_373964.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus N31... gi\|25299681 - pir\|\|C89848 peptide chain release factor 2 [imported] - Staphylococcus aureus (strain N315) gi\|82655989, gi\|... - gi\|82750458\|ref\|YP_416199.1\| peptide chain release factor 2 [Staphylococcus aureus RF122], gi\|826559... gi\|14246523, gi\|... - gi\|15923744\|ref\|NP_371278.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus Mu5... gi\|251813724, gi... - gi\|251813724\|ref\|ZP_04828197.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ... gi\|253724907, gi... - gi\|253731382\|ref\|ZP_04865547.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ... gi\|156979082, gi... - gi\|156979082\|ref\|YP_001441341.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus... gi\|221139411 - gi\|221139411\|ref\|ZP_03564210.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ... gi\|255005545 - gi\|255005545\|ref\|ZP_05144146.2\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ...	4.0E-50	[5..149]	[169..316]
gi\|224534094, gi... - gi\|224534094\|ref\|ZP_03674677.1\| peptide chain release factor 1 [Borrelia burgdorferi CA-11.2a], gi\|2... gi\|224532854, gi... - gi\|224532854\|ref\|ZP_03673469.1\| peptide chain release factor 1 [Borrelia burgdorferi WI91-23], gi\|22... gi\|225549805, gi... - gi\|225549805\|ref\|ZP_03770769.1\| peptide chain release factor 1 [Borrelia burgdorferi 118a], gi\|22536... gi\|226321514, gi... - gi\|226321514\|ref\|ZP_03797040.1\| peptide chain release factor 1 [Borrelia burgdorferi Bol26], gi\|2262... RF1_BORBU - Peptide chain release factor 1 OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4... gi\|223889241, gi... - gi\|223889241\|ref\|ZP_03623829.1\| peptide chain release factor 1 [Borrelia burgdorferi 64b], gi\|223885... RF1_BORBU - Peptide chain release factor 1 OS=Borrelia burgdorferi GN=prfA PE=3 SV=1 gi\|221192607, gi... - gi\|221217544\|ref\|ZP_03589014.1\| peptide chain release factor 1 [Borrelia burgdorferi 72a], gi\|221192... RF1_BORBZ - Peptide chain release factor 1 OS=Borrelia burgdorferi (strain ZS7) GN=prfA PE=3 SV=1 gi\|215981024, gi... - gi\|216264551\|ref\|ZP_03436543.1\| peptide chain release factor 1 [Borrelia burgdorferi 156a], gi\|21598...	7.0E-50	[5..154]	[192..327]
RF1_CLOPS - Peptide chain release factor 1 OS=Clostridium perfringens (strain SM101 / Type A) GN=prfA PE=3 SV=1 gi\|182624062, gi... - gi\|182624062\|ref\|ZP_02951850.1\| peptide chain release factor 1 [Clostridium perfringens D str. JGS17... gi\|169297625, gi... - gi\|169344167\|ref\|ZP_02865149.1\| peptide chain release factor 1 [Clostridium perfringens C str. JGS14... RF1_CLOPE - Peptide chain release factor 1 OS=Clostridium perfringens (strain 13 / Type A) GN=prfA PE=3 SV=1 gi\|182382220, gi... - gi\|182382220\|gb\|EDT79699.1\| peptide chain release factor 1 [Clostridium perfringens NCTC 8239], gi\|1... RF1_CLOP1 - Peptide chain release factor 1 OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / ... gi\|170714864, gi... - gi\|170714864\|gb\|EDT27046.1\| peptide chain release factor 1 [Clostridium perfringens CPE str. F4969],... gi\|168210131, gi... - gi\|170711762\|gb\|EDT23944.1\| peptide chain release factor 1 [Clostridium perfringens B str. ATCC 3626... gi\|170662868, gi... - gi\|170662868\|gb\|EDT15551.1\| peptide chain release factor 1 [Clostridium perfringens E str. JGS1987],... RF1_CLOPE - Peptide chain release factor 1 OS=Clostridium perfringens GN=prfA PE=3 SV=1	8.0E-50	[5..154]	[192..327]
RF1_CAMJE - Peptide chain release factor 1 OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 70081... RF1_CAMJE - Peptide chain release factor 1 OS=Campylobacter jejuni GN=prfA PE=3 SV=1 gi\|85840073, gi\|... - gi\|86149291\|ref\|ZP_01067522.1\| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni CF...	1.0E-49	[5..154]	[189..324]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRGASKRSI SSAAVLLIKK NKLPPRPKFT PEMEAQCTEK FLHGGRGPGG QKINKCNSKV  60
   61 QLRHEPTGIV VECQETRSRE QNRKLARLKL ARELAASYDT MPSREEALLQ WHRQQKRSQR 120
  121 RRSVAKYEQR EEAARVEKEE REARDREMVR ELFRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.06601
Match:	1gqeA_
Description:	Polypeptide chain release factor 2 (RF2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits