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View Structure Prediction Details

Protein: TMA7
Organism: Saccharomyces cerevisiae
Length: 64 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMA7.

Description E-value Query
Range
Subject
Range
gi|76621793 - gi|76621793|ref|XP_595705.2| PREDICTED: similar to endothelial differentiation, sphingolipid G-prote...
58.0 [0..3] [63..14]
gi|114556120 - gi|114556120|ref|XP_001137704.1| PREDICTED: similar to coiled-coil domain containing 72 [Pan troglod...
55.0 [0..1] [38..1]
gi|70867008, gi|... - gi|70867008|gb|EAN82327.1| hypothetical protein, conserved [Trypanosoma cruzi], gi|70864445|gb|EAN81...
gi|71402552, gi|... - gi|71402552|ref|XP_804178.1| hypothetical protein [Trypanosoma cruzi strain CL Brener], gi|71398868|...
47.0 [0..1] [51..34]

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Predicted Domain #1
Region A:
Residues: [1-64]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRQGGKMK PLKQKKKQQQ DLDPEDIAFK EKQKADAAAK KALMANMKSG KPLVGGGIKK  60
   61 SGKK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.721246
Match: PF09072.1
Description: No description for PF09072.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.372 N/A N/A a.57.1 Protein HNS-dependent expression A; HdeA
View Download 0.372 N/A N/A a.57.1 Protein HNS-dependent expression A; HdeA
View Download 0.336 N/A N/A a.39.1 EF-hand
View Download 0.320 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.320 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.261 N/A N/A a.39.1 EF-hand
View Download 0.247 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.247 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.232 N/A N/A a.4.1 Homeodomain-like
View Download 0.205 N/A N/A a.4.1 Homeodomain-like
View Download 0.204 N/A N/A a.64.1 Saposin


YRC Informatics Platform - Version 3.0
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