| Protein: | LCB5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 687 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCB5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..687] | [1..687] |
|
|
3.0E-83 | [261..678] | [181..641] |
|
|
7.0E-80 | [152..586] | [224..683] |
|
|
3.0E-78 | [259..678] | [136..613] |
|
|
4.0E-77 | [265..668] | [25..371] |
|
Region A: Residues: [1-201] |
1 11 21 31 41 51
| | | | | |
1 MTLKPSKRRK GRSRHSRKKQ ITSAILTEEG IMIKAKPSSP YTYANRMADK RSRSSIDNIS 60
61 RTSFQSNISR TSFQSNSDNN SIFETASLIS CVTCLSDTDT IDRSETSTTD TSKDDLSANP 120
121 KLHYPSVNGQ LPANTVIPYG RILDARYIEK EPLHYYDANS SPSSPLSSSM SNISEKCDLD 180
181 ELESSQKKER KGNSLSRGSN S
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [202-412] |
1 11 21 31 41 51
| | | | | |
1 SSSLLTSRSP FTKLVEVIFA RPRRHDVVPK RVSLYIDYKP HSSSHLKEED DLVEEILKRS 60
61 YKNTRRNKSI FVIINPFGGK GKAKKLFMTK AKPLLLASRC SIEVVYTKYP GHAIEIAREM 120
121 DIDKYDTIAC ASGDGIPHEV INGLYQRPDH VKAFNNIAIT EIPCGSGNAM SVSCHWTNNP 180
181 SYSTLCLIKS IETRIDLMCC SQPSYAREHP K
|
| Detection Method: | |
| Confidence: | 44.60206 |
| Match: | PF00781 |
| Description: | Diacylglycerol kinase catalytic domain (presumed) |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| kinase activity | 0.697281815339077 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.541546416312833 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.416174911659548 | bayes_pls_golite062009 |
| catalytic activity | 0.33446102778142 | bayes_pls_golite062009 |
|
Region A: Residues: [413-591] |
1 11 21 31 41 51
| | | | | |
1 LSFLSQTYGL IAETDINTEF IRWMGPARFE LGVAFNIIQK KKYPCEIYVK YAAKSKNELK 60
61 NHYLEHKNKG SLEFQHITMN KDNEDCDNYN YENEYETENE DEDEDADADD EDSHLISRDL 120
121 ADSSADQIKE EDFKIKYPLD EGIPSDWERL DPNISNNLGI FYTGKMPYVA ADTKFFPAA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [592-687] |
1 11 21 31 41 51
| | | | | |
1 LPSDGTMDMV ITDARTSLTR MAPILLGLDK GSHVLQPEVL HSKILAYKII PKLGNGLFSV 60
61 DGEKFPLEPL QVEIMPRLCK TLLRNGRYVD TDFDSM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.590 | d.93.1 | SH2 domain |
| View | Download | 0.464 | b.1.2 | Fibronectin type III |
| View | Download | 0.483 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.467 | d.129.2 | Phosphoglucomutase, C-terminal domain |
| View | Download | 0.452 | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.436 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.435 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.432 | a.46.1 | Methionine synthase domain |
| View | Download | 0.431 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.428 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.403 | a.74.1 | Cyclin-like |
| View | Download | 0.398 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.394 | d.212.1 | TolA/TonB C-terminal domain |
| View | Download | 0.380 | c.23.1 | CheY-like |
| View | Download | 0.375 | d.57.1 | DNA damage-inducible protein DinI |
| View | Download | 0.373 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.364 | d.93.1 | SH2 domain |
| View | Download | 0.357 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.351 | d.58.12 | eEF-1beta-like |
| View | Download | 0.335 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.328 | c.103.1 | Hypothetical protein MT938 (MTH938) |
| View | Download | 0.306 | d.58.49 | YajQ-like |
| View | Download | 0.301 | a.3.1 | Cytochrome c |
| View | Download | 0.295 | b.1.1 | Immunoglobulin |
| View | Download | 0.283 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.280 | b.84.2 | Rudiment single hybrid motif |
| View | Download | 0.277 | b.36.1 | PDZ domain-like |
| View | Download | 0.276 | d.82.1 | Copper amine oxidase, domain N |
| View | Download | 0.270 | a.39.1 | EF-hand |
| View | Download | 0.266 | d.82.2 | Frataxin-like |
| View | Download | 0.264 | a.118.1 | ARM repeat |
| View | Download | 0.258 | c.15.1 | BRCT domain |
| View | Download | 0.257 | d.58.11 | EF-G/eEF-2 domains III and V |
| View | Download | 0.256 | d.45.1 | ClpS-like |
| View | Download | 0.251 | d.105.1 | Clathrin adaptor appendage, alpha and beta chain-specific domain |
| View | Download | 0.248 | d.49.1 | Signal recognition particle alu RNA binding heterodimer, SRP9/14 |
| View | Download | 0.241 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
| View | Download | 0.240 | d.212.1 | TolA/TonB C-terminal domain |
| View | Download | 0.226 | a.4.8 | Ribosomal protein S18 |
| View | Download | 0.226 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
| View | Download | 0.221 | d.141.1 | Ribosomal protein L6 |
| View | Download | 0.217 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.208 | d.58.7 | RNA-binding domain, RBD |
| View | Download | 0.205 | d.58.23 | Probable ACP-binding domain of malonyl-CoA ACP transacylase |
| View | Download | 0.205 | d.58.27 | Translational regulator protein regA |
| View | Download | 0.204 | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.203 | a.141.1 | Frizzled cystein-rich domain |
