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View Structure Prediction Details

Protein: YEF3
Organism: Saccharomyces cerevisiae
Length: 1044 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEF3.

Description E-value Query
Range
Subject
Range
gi|173216, gi|17... - gi|227236|prf||1617104A elongation factor 3, gi|173216|gb|AAA35233.1| elongation factor 3, gi|173214...
0.0 [1..1044] [1..1044]
gi|3786314 - gi|3786314|dbj|BAA33959.1| translation elongation factor3 [Candida glabrata]
0.0 [1..1043] [1..1043]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [2..1044] [5..1050]
EF3_CANAL - Elongation factor 3 OS=Candida albicans GN=TEF3 PE=1 SV=1
0.0 [2..1044] [5..1049]
EF3_SCHPO - Elongation factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef3 PE=1 SV=1
tef3 - translation elongation factor eEF3
0.0 [2..1036] [5..1042]
EF3_PNECA - Elongation factor 3 OS=Pneumocystis carinii GN=TEF3 PE=3 SV=1
0.0 [7..1042] [7..1042]
gi|13442976 - gi|13442976|gb|AAK26245.1| elongation factor 3 [Cryptococcus neoformans var. neoformans]
gi|58266210, gi|... - gi|58266210|ref|XP_570261.1| elongation factor 3 [Cryptococcus neoformans var. neoformans JEC21], gi...
gi|134111046, gi... - gi|50258329|gb|EAL21018.1| hypothetical protein CNBD3940 [Cryptococcus neoformans var. neoformans B-...
0.0 [15..1039] [18..1052]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSQQSIKV LEELFQKLSV ATADNRHEIA SEVASFLNGN IIEHDVPEHF FGELAKGIKD  60
   61 KKTAANAMQA V

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.93
Match: 1lshA
Description: Lipovitellin-phosvitin complex, superhelical domain; Lipovitellin-phosvitin complex; beta-sheet shell regions
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [72-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AHIANQSNLS PSVEPYIVQL VPAICTNAGN KDKEIQSVAS ETLISIVNAV NPVAIKALLP  60
   61 HLTNAIVETN KWQEKIAILA AISAMVDAAK DQVALRMPEL IPVLSETM

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.93
Match: 1lshA
Description: Lipovitellin-phosvitin complex, superhelical domain; Lipovitellin-phosvitin complex; beta-sheet shell regions
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [180-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WDTKKEVKAA ATAAMTKATE TVDNKDIERF IPSLIQCIAD PTEVPETVHL LGATTFVAEV  60
   61 TPATLSIMVP LLSRGLNERE TGIKRKSAVI IDNMCKLVED PQVIAPFLGK LLPGLKSNFA 120
  121 TIADPEAREV TLRALKTLRR VGNVG

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 13.93
Match: 1lshA
Description: Lipovitellin-phosvitin complex, superhelical domain; Lipovitellin-phosvitin complex; beta-sheet shell regions
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [325-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDDAIPEVSH AGDVSTTLQV VNELLKDETV APRFKIVVEY IAAIGADLID ERIIDQQAWF  60
   61 THITPYMTIF LHEKKAKDIL DEFRKRAVDN IPVGPNFDDE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [425-662]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDEGEDLCNC EFSLAYGAKI LLNKTQLRLK RARRYGICGP NGCGKSTLMR AIANGQVDGF  60
   61 PTQEECRTVY VEHDIDGTHS DTSVLDFVFE SGVGTKEAIK DKLIEFGFTD EMIAMPISAL 120
  121 SGGWKMKLAL ARAVLRNADI LLLDEPTNHL DTVNVAWLVN YLNTCGITSI TISHDSVFLD 180
  181 NVCEYIINYE GLKLRKYKGN FTEFVKKCPA AKAYEELSNT DLEFKFPEPG YLEGVKTK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 105.0
Match: 1g291_
Description: Maltose transport protein MalK, C-terminal domain; Maltose transport protein MalK, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [663-686]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKAIVKVTNM EFQYPGTSKP QITD

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [707-806]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSTLINVLTG ELLPTSGEVY THENCRIAYI KQHAFAHIES HLDKTPSEYI QWRFQTGEDR  60
   61 ETMDRANRQI NENDAEAMNK IFKIEGTPRR IAGIHSRRKF 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 1e69A_
Description: Smc head domain
Matching Structure (courtesy of the PDB):

Predicted Domain #7
Region A:
Residues: [687-706]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INFQCSLSSR IAVIGPNGAG 

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [807-975]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNTYEYECSF LLGENIGMKS ERWVPMMSVD NAWIPRGELV ESHSKMVAEV DMKEALASGQ  60
   61 FRPLTRKEIE EHCSMLGLDP EIVSHSRIRG LSGGQKVKLV LAAGTWQRPH LIVLDEPTNY 120
  121 LDRDSLGALS KALKEFEGGV IIITHSAEFT KNLTEEVWAV KDGRMTPSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.69897
Match: 1e69A_
Description: Smc head domain
Matching Structure (courtesy of the PDB):

Predicted Domain #8
Region A:
Residues: [976-1044]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNWVSGQGAG PRIEKKEDEE DKFDAMGNKI AGGKKKKKLS SAELRKKKKE RMKKKKELGD  60
   61 AYVSSDEEF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle