YRC Public Data Repository - Protein Structure Prediction

Protein:	BNA5
Organism:	Saccharomyces cerevisiae
Length:	453 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BNA5.

Description	E-value	Query Range	Subject Range
gi\|209763242, gi... - gi\|7447233\|pir\|\|A65030 probable iron-sulfur cofactor synthesis protein b2530 - Escherichia coli (str... gi\|13362867 - gi\|13362867\|dbj\|BAB36819.1\| cysteine desulfurase [Escherichia coli O157:H7] gi\|26248898, gi\|... - gi\|26248898\|ref\|NP_754938.1\| cysteine desulfurase [Escherichia coli CFT073], gi\|26109304\|gb\|AAN81506... gi\|226901407, gi... - gi\|237705041\|ref\|ZP_04535522.1\| cysteine desulfurase [Escherichia sp. 3_2_53FAA], gi\|226901407\|gb\|EE... gi\|117624758, gi... - gi\|117624758\|ref\|YP_853671.1\| cysteine desulfurase [Escherichia coli APEC O1], gi\|115513882\|gb\|ABJ01... gi\|82544979, gi\|... - gi\|82544979\|ref\|YP_408926.1\| putative aminotransferase [Shigella boydii Sb227], gi\|81246390\|gb\|ABB67... gi\|81242061, gi\|... - gi\|82777913\|ref\|YP_404262.1\| putative aminotransferase [Shigella dysenteriae Sd197], gi\|81242061\|gb\|... gi\|74313056, gi\|... - gi\|74313056\|ref\|YP_311475.1\| putative aminotransferase [Shigella sonnei Ss046], gi\|73856533\|gb\|AAZ89... gi\|12516934, gi\|... - gi\|15803057\|ref\|NP_289087.1\| cysteine desulfurase [Escherichia coli O157:H7 EDL933], gi\|12516934\|gb\|... gi\|13362867 - gi\|13362867\|dbj\|BAB36819.1\| cysteine desulfurase [Escherichia coli O157:H7 str. Sakai] gi\|91073431, gi\|... - gi\|91211857\|ref\|YP_541843.1\| cysteine desulfurase [Escherichia coli UTI89], gi\|91073431\|gb\|ABE08312....	3.0E-95	[36..453]	[12..388]
gi\|199606104, gi... - gi\|200389006\|ref\|ZP_03215618.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serov... gi\|204321168, gi... - gi\|204929449\|ref\|ZP_03220523.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serov... ISCS_SALG2 - Cysteine desulfurase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=iscS PE=3 SV=1 ISCS_SALEP - Cysteine desulfurase OS=Salmonella enteritidis PT4 (strain P125109) GN=iscS PE=3 SV=1 gi\|56412579, gi\|... - gi\|56412579\|ref\|YP_149654.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Parat... gi\|16765863, gi\|... - gi\|16765863\|ref\|NP_461478.1\| cysteine desulfurase [Salmonella typhimurium LT2], gi\|16421088\|gb\|AAL21... gi\|62181107, gi\|... - gi\|62181107\|ref\|YP_217524.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Chole... ISCS_SALCH - Cysteine desulfurase OS=Salmonella choleraesuis GN=iscS PE=3 SV=1 ISCS_SALTY - Cysteine desulfurase OS=Salmonella typhimurium GN=iscS PE=3 SV=1 gi\|238912664 - gi\|238912664\|ref\|ZP_04656501.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Te... ISCS_SALPA - Cysteine desulfurase OS=Salmonella paratyphi A GN=iscS PE=3 SV=1 ISCS_SALCH - Cysteine desulfurase OS=Salmonella choleraesuis GN=iscS PE=3 SV=1 ISCS_SALTY - Cysteine desulfurase OS=Salmonella typhimurium GN=iscS PE=3 SV=1 gi\|167992668, gi... - gi\|205329088\|gb\|EDZ15852.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar 4... gi\|167549430, gi... - gi\|205325222\|gb\|EDZ13061.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar S... ISCS_SALPB - Cysteine desulfurase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iscS PE=3 SV=1 gi\|168466701, gi... - gi\|195630769\|gb\|EDX49361.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar N... gi\|168261415, gi... - gi\|205349590\|gb\|EDZ36221.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar H... gi\|205337629, gi... - gi\|205337629\|gb\|EDZ24393.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar H... gi\|168232116, gi... - gi\|205333600\|gb\|EDZ20364.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar K... gi\|194457759, gi... - gi\|194471395\|ref\|ZP_03077379.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serov... ISCS_SALHS - Cysteine desulfurase OS=Salmonella heidelberg (strain SL476) GN=iscS PE=3 SV=1 ISCS_SALNS - Cysteine desulfurase OS=Salmonella newport (strain SL254) GN=iscS PE=3 SV=1 gi\|205341918, gi... - gi\|205341918\|gb\|EDZ28682.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serovar W... ISCS_SALPB - Cysteine desulfurase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=iscS PE=3 SV=1 ISCS_SALDC - Cysteine desulfurase OS=Salmonella dublin (strain CT_02021853) GN=iscS PE=3 SV=1 ISCS_SALPK - Cysteine desulfurase OS=Salmonella paratyphi A (strain AKU_12601) GN=iscS PE=3 SV=1 gi\|197263596, gi... - gi\|197263596\|ref\|ZP_03163670.1\| cysteine desulfurase IscS [Salmonella enterica subsp. enterica serov... ISCS_SALA4 - Cysteine desulfurase OS=Salmonella agona (strain SL483) GN=iscS PE=3 SV=1	4.0E-95	[36..453]	[4..380]
gi\|213580753 - gi\|213580753\|ref\|ZP_03362579.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Ty... ISCS_SALTI - Cysteine desulfurase OS=Salmonella typhi GN=iscS PE=3 SV=1 gi\|29140846, gi\|... - gi\|29140846\|ref\|NP_804188.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Typhi... ISCS_SALTI - Cysteine desulfurase OS=Salmonella typhi GN=iscS PE=3 SV=1 gi\|213646425 - gi\|213646425\|ref\|ZP_03376478.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Ty... gi\|214000603 - gi\|214000603\|ref\|ZP_03411338.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Ty... gi\|16761457 - gi\|16761457\|ref\|NP_457074.1\| cysteine desulfurase [Salmonella enterica subsp. enterica serovar Typhi...	7.0E-95	[36..453]	[4..380]
ISCS_PASMU - Cysteine desulfurase OS=Pasteurella multocida (strain Pm70) GN=iscS PE=3 SV=1 ISCS_PASMU - Cysteine desulfurase OS=Pasteurella multocida GN=iscS PE=3 SV=1	4.0E-94	[36..453]	[4..380]
NFS1_CANAL - Cysteine desulfurase, mitochondrial OS=Candida albicans GN=NFS1 PE=3 SV=1 NFS1_CANAL - Cysteine desulfurase, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NFS1 PE=3...	2.0E-93	[33..453]	[85..464]
NFS1_CANMA - Cysteine desulfurase, mitochondrial OS=Candida maltosa GN=SPL1 PE=3 SV=1	2.0E-93	[33..453]	[81..460]
NFS1_ASHGO - Cysteine desulfurase, mitochondrial OS=Ashbya gossypii GN=NFS1 PE=3 SV=1 NFS1_ASHGO - Cysteine desulfurase, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	3.0E-93	[13..453]	[69..466]
NFS1 - Cysteine desulfurase involved in iron-sulfur cluster (Fe/S) biogenesis; required for the post-transc... gi\|151943808 - gi\|151943808\|gb\|EDN62108.1\| nifs-like protein [Saccharomyces cerevisiae YJM789] NFS1_YEAST - Cysteine desulfurase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NFS1...	5.0E-93	[33..453]	[96..473]
NIFS_ANAAZ - Cysteine desulfurase OS=Anabaena azollae GN=nifS PE=3 SV=1 NIFS1_ANAVT - Cysteine desulfurase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=nifS1 PE=3 SV=2	1.0E-92	[36..453]	[3..376]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKALELDGE YPESLRDEFN IPTFKSMGLS SDDKPVTYLC GNSLGLMPKS TRNSINAELD  60
   61 AWSDCAVESH FKHPEEARGK VPWVSIDLPI LPLLAPIVGA QENEVAVMNS LTANLNSLLI 120
  121 TFYKPTEKRF KILFEKGSFP SDYYAFYNQC KIHGISEPEN VFIQIEPREG ETYIRTQDIL 180
  181 DTIEVNQDEL ALVCLSGVQY YTGQYFDIGR ITSFAHQFPD ILVGWDLAHA VGNVPLQLHD 240
  241 WGVDFACWCS YKYLNAGPGG IGGLFVHSKH TKPDPAKESL PRLAGWWGND PAKRFQMLEV 300
  301 FEPIPGALGF RQSNPSVIDT VALRSSLELF AKFNGINEVR K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.626727
Match:	1elqA_
Description:	Cystine C-S lyase C-des
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [342-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSLLLTNYMT ELLEASKYYK HPLRIEKLPC FFTILTPTST DEEHGAQLSL YFDSDTGKED  60
   61 IMPKVFQYLH DHGVIGDARR PNVIRLAPAP LYNTFSDVYI AVNALNEAMD KL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.626727
Match:	1elqA_
Description:	Cystine C-S lyase C-des
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits