YRC Public Data Repository - Protein Structure Prediction

Protein:	HMX1
Organism:	Saccharomyces cerevisiae
Length:	273 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMX1.

Description	E-value	Query Range	Subject Range
HMOX2_RABIT - Heme oxygenase 2 OS=Oryctolagus cuniculus GN=HMOX2 PE=2 SV=1	5.0E-55	[6..218]	[62..241]
HO1_SYNY3 - Heme oxygenase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pbsA1 PE=1 SV=1 gi\|7433265, gi\|5... - pir\|\|S74713 heme oxygenase (decyclizing) (EC 1.14.99.3) 1 - Synechocystis sp. (strain PCC 6803), gi... HO1_SYNY3 - Heme oxygenase 1 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=pbsA1 PE=1 SV=1	5.0E-55	[7..228]	[39..223]
HMOX2_RAT - Heme oxygenase 2 OS=Rattus norvegicus GN=Hmox2 PE=1 SV=1	1.0E-54	[6..215]	[65..241]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-54	[6..215]	[65..241]
HMOX1_CHICK - Heme oxygenase 1 OS=Gallus gallus GN=HMOX1 PE=1 SV=2	2.0E-54	[7..213]	[50..223]
HMOX2_MOUSE - Heme oxygenase 2 OS=Mus musculus GN=Hmox2 PE=1 SV=1	2.0E-54	[6..215]	[65..241]
gi\|56687204, gi\|... - gi\|56752245\|ref\|YP_172946.1\| heme oxygenase [Synechococcus elongatus PCC 6301], gi\|56687204\|dbj\|BAD8... gi\|45513325, gi\|... - gi\|81300667\|ref\|YP_400875.1\| Heme oxygenase (decyclizing) [Synechococcus elongatus PCC 7942], gi\|811...	7.0E-54	[7..228]	[39..223]
HGNC:5013\|MIM:14... - oxygenase (decycling) 1 HMOX1 - heme oxygenase (decycling) 1 gi\|114686120 - gi\|114686120\|ref\|XP_525579.2\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi\|61357300, gi\|... - gi\|61357300\|gb\|AAX41367.1\| heme oxygenase 1 [synthetic construct], gi\|109451924\|emb\|CAK54833.1\| HMOX...	1.0E-53	[7..213]	[47..220]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHGFIYRQG ILAYYYVFDA IEQEIDRLLN DPVTEEELQT STILKQFWLE DFRRSTQIYK  60
   61 DLKLLYSNTF KSTESLNEFL ATFQKPPLLQ QFINNIHENI HKEPCTILSY CHVLYLALFA 120
  121 GGKLIRSNLY RRLGLFPNFE KLSQKELVKK GTNFFTFSDL GPTEETRLKW EYKKNYELAT 180
  181 RTELTEAQKL QIISVAEGIF DWNFNIVAEI GELNRRELMG KFSFKCITYL YEEWMFNKDS 240
  241 ATRRALHTVM LLVLSIIAIW VLYFLVKSFL SIV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.519517
Match:	1qq8A_
Description:	No description for 1qq8A_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits