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View Structure Prediction Details

Protein: YLR194C
Organism: Saccharomyces cerevisiae
Length: 254 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR194C.

Description E-value Query
Range
Subject
Range
gi|15004708, gi|... - gi|15004708|ref|NP_149168.1| ChW repeat-/cell adhesion domain-containing transglutaminase-like prote...
3.0E-64 [2..253] [25..281]
gi|6649538 - gi|6649538|gb|AAF21451.1|U38618_1 intimin [Escherichia coli]
4.0E-57 [5..232] [599..852]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKACSILFTT LITLAAAQKD SGSLDGQNSE DSSQKESSNS QEITPTTTKE AQESASTVVS  60
   61 TGKSLVQTSN VVSNTYAVAP STTVVTTDAQ GKTTTQYLWW VAESNSAVST TSTASVQPTG 120
  121 ETSSGITNSA SSSTTSTSTD GPVTIVTTTN SL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 1f00I_
Description: Intimin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [153-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GETYTSTVWW LPSSATTDNT ASSSKSSSGS SSKPESSTKV VSTIKSTYTT TSGSTVETLT  60
   61 TTYKSTVNGK VASVMSNSTN GAFAGTHIAY GAGAFAVGAL LL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 1f00I_
Description: Intimin
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle