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View Structure Prediction Details

Protein: HCR1
Organism: Saccharomyces cerevisiae
Length: 265 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HCR1.

Description E-value Query
Range
Subject
Range
gi|190405260 - gi|190405260|gb|EDV08527.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
EIF3J_YEAST - Eukaryotic translation initiation factor 3 subunit J OS=Saccharomyces cerevisiae (strain ATCC 204508...
HCR1 - Dual function protein involved in translation initiation as a substoichiometric component (eIF3j) of...
gi|151941035 - gi|151941035|gb|EDN59415.1| translation initiation factor eIF3 subunit [Saccharomyces cerevisiae YJM...
0.0 [1..254] [1..254]

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Predicted Domain #1
Region A:
Residues: [1-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWDDEAING SMGNDDAVLM DSWDAEIGDD EPVMQSWDAE EEEKKPAPKP KKEQPKKVKK  60
   61 GKESSADRAL LDIDTLDEKT RKELIKKAEM ESDLNNAADL FAGLGVAEEH PRARALQKEQ 120
  121 EEQALKRPAF TKDTPIETHP LFNAETKREY QDLRKALTAA ITPMNKKSPL NYSSSLAIDL 180
  181 IRDVAKPMSI ESIRQTVATL NVLIKDKERE ERQARLARVR GGTATGGAGK KKVKGKTNLG 240
  241 GAFKKDQDFD LDGPDDFEFG DDDFM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle