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View Structure Prediction Details

Protein: YLR177W
Organism: Saccharomyces cerevisiae
Length: 628 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR177W.

Description E-value Query
Range
Subject
Range
gi|45199214, gi|... - gi|45199214|ref|NP_986243.1| AFR695Cp [Ashbya gossypii ATCC 10895], gi|44985354|gb|AAS54067.1| AFR69...
gi|44985354 - gi|44985354|gb|AAS54067.1| AFR695Cp [Ashbya gossypii ATCC 10895]
442.0 [0..2] [627..3]
gi|49524319, gi|... - gi|50285175|ref|XP_445016.1| unnamed protein product [Candida glabrata], gi|49524319|emb|CAG57916.1|...
gi|49524319 - gi|49524319|emb|CAG57916.1| unnamed protein product [Candida glabrata]
438.0 [0..1] [627..1]
gi|50304633, gi|... - gi|50304633|ref|XP_452272.1| unnamed protein product [Kluyveromyces lactis], gi|49641405|emb|CAH0112...
gi|49641405 - gi|49641405|emb|CAH01123.1| KLLA0C01716p [Kluyveromyces lactis]
411.0 [0..136] [627..291]
gi|992654 - gi|992654|gb|AAA93076.1| high copy suppressor of polymerase alpha mutations
353.0 [0..250] [627..409]
gi|28918287, gi|... - gi|32415473|ref|XP_328216.1| hypothetical protein [Neurospora crassa], gi|28918287|gb|EAA27964.1| hy...
gi|85083838 - gi|85083838|ref|XP_957200.1| hypothetical protein [Neurospora crassa OR74A]
307.0 [0..324] [565..508]
gi|46107926, gi|... - gi|46107926|ref|XP_381022.1| hypothetical protein FG00846.1 [Gibberella zeae PH-1], gi|42547596|gb|E...
272.0 [0..324] [565..495]
gi|116199401, gi... - gi|88179135|gb|EAQ86603.1| hypothetical protein CHGG_07856 [Chaetomium globosum CBS 148.51], gi|1161...
271.0 [0..323] [565..497]
SPBPB7E8.02 - PSP1 family protein
YOM2_SCHPO - Uncharacterized protein PB7E8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPB7E8....
253.0 [0..318] [565..529]

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Predicted Domain #1
Region A:
Residues: [1-52]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELPSINSTT SISDNQELRN YYDKLLFKNN SGKSLADLPG KMADFNDNSA AA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [53-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPRSRVDFIN GYIGFREDKQ SLLGQKNTKR ASFSAFADEG RKQSEMSING KSPNLSLFSF  60
   61 EFNGTPTQDR KPYKQDYLNV MNTSPNNILS PLNNSSQKYY PQKQQQQQQQ QQQQQQQSIF 120
  121 DPGRRSSYIS DALIHGNAAT QQPQYSQPVY INNNPSLQVP YTAPSEYTQQ QQYSSPFNAR 180
  181 RNTQPVLNLH PAAAPTNDAG LAVVDGKNLT SSKELHDLYL DCGSNYFASD KVYKFIDSIK 240
  241 GTLRGDNVSA SSSRIIEFLD FLKNCNLNYN PQSDAFISTA VSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [336-628]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASSTGAAKSK NSTSMHLHYK PLVLVSLKNG KLELLSKPQT ATLILKRGDL VIIDGDRGKD  60
   61 LVLVVEPVVD INLALFINFL KKKIHFDSLI TNSQQHFPND QFIKTLVDTT NGKPVAHELN 120
  121 PKLYDIIELT QLIIPSKQVL RFATPWESST NLHNKFQDEL KALHIAQLKL RSLNNNNSGG 180
  181 GLNIKILNAE FQFDRKKLTF YYICQERNDF RDLIKELFKF YKTRIWLCAI PNNLSIDSKF 240
  241 YDSNKFEWEM YQDMMSHYSM DNTGIVVAPE LNRLKLDDFQ IGVYMELVKV LFG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle