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View Structure Prediction Details

Protein: YLR171W
Organism: Saccharomyces cerevisiae
Length: 129 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR171W.

Description E-value Query
Range
Subject
Range
gi|50312129, gi|... - gi|50312129|ref|XP_456096.1| unnamed protein product [Kluyveromyces lactis], gi|49645232|emb|CAG9880...
55.0 [0..1] [49..55]

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Predicted Domain #1
Region A:
Residues: [1-129]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSQTLPKY VSIVSTNRWI ISKVSSSLST SGVIPTIKYR LAYRLYTTLW SLYSMMLHIL  60
   61 GFLANIVGVK SFTIFAFSPA DIAVYHFFNL IFPCLETSNK YFNCVILCTC VSVYNLLQDR 120
  121 SCSWLKLLL

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.952 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle