YRC Public Data Repository - Protein Structure Prediction

Protein:	RMP1
Organism:	Saccharomyces cerevisiae
Length:	201 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RMP1.

Description	E-value	Query Range	Subject Range
gi\|49528861, gi\|... - gi\|50294271\|ref\|XP_449547.1\| hypothetical protein CAGL0M04587g [Candida glabrata CBS138], gi\|4952886... gi\|49528861 - gi\|49528861\|emb\|CAG62523.1\| unnamed protein product [Candida glabrata]	118.0	[0..11]	[201..11]
gi\|49642949, gi\|... - gi\|50307671\|ref\|XP_453815.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642949\|emb\|CAH0091... gi\|49642949 - gi\|49642949\|emb\|CAH00911.1\| KLLA0D17072p [Kluyveromyces lactis]	109.0	[0..7]	[201..11]
gi\|44985707 - gi\|44985707\|gb\|AAS54331.1\| AGL160Wp [Ashbya gossypii ATCC 10895] gi\|45200937, gi\|... - gi\|45200937\|ref\|NP_986507.1\| AGL160Wp [Ashbya gossypii ATCC 10895], gi\|44985707\|gb\|AAS54331.1\| AGL16...	108.0	[0..3]	[154..14]
gi\|50422883, gi\|... - gi\|50422883\|ref\|XP_460019.1\| hypothetical protein DEHA0E17193g [Debaryomyces hansenii CBS767], gi\|49...	84.0	[0..11]	[165..13]
gi\|49649424 - gi\|49649424\|emb\|CAG79136.1\| YALI0E04741p [Yarrowia lipolytica] gi\|50552161, gi\|... - gi\|50552161\|ref\|XP_503555.1\| YALI0E04741p [Yarrowia lipolytica], gi\|49649424\|emb\|CAG79136.1\| unnamed...	60.0	[0..14]	[161..42]
gi\|68467478, gi\|... - gi\|68467478\|ref\|XP_722172.1\| hypothetical protein CaO19.4962 [Candida albicans SC5314], gi\|68467245\|... orf19.12427, orf... - orf19.4962 CGDID:CAL0006360 Assembly 19, Contig19-10216 (122280, 121078) CDS, reverse complemented, ...	59.0	[0..6]	[115..29]
gi\|70984058, gi\|... - gi\|70984058\|ref\|XP_747550.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668451...	50.0	[0..15]	[200..10]
gi\|111062232 - gi\|111062232\|gb\|EAT83352.1\| predicted protein [Phaeosphaeria nodorum SN15]	47.0	[0..24]	[112..38]
gi\|115398448, gi... - gi\|115398448\|ref\|XP_001214813.1\| predicted protein [Aspergillus terreus NIH2624], gi\|114191696\|gb\|EA...	47.0	[0..15]	[192..10]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEMDNVIRS LEQEYRLILL LNHRNKNQHR AASWYGSFNE MKRNCGQIIT LFSSRRLQAK  60
   61 RLKDVEWVKL HRLLQRALFR QLKRWYWQFN GVIALGQFVT LGCTLVTLLA NVRALYMRLW 120
  121 EINETEFIRC GCLIKNLPRT KAKSVVNDVE ELGEIIDEDI GNNVQENELV ITSIPKPLTE 180
  181 NCKKKKKRKK KNKSAIDGIF G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.838	N/A	N/A	f.35.1	Multidrug efflux transporter AcrB transmembrane domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits