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View Structure Prediction Details

Protein: SLX4
Organism: Saccharomyces cerevisiae
Length: 748 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLX4.

Description E-value Query
Range
Subject
Range
SLX4 - Endonuclease involved in processing DNA during recombination and repair; cleaves branched structures...
SLX4_YEAST - Structure-specific endonuclease subunit SLX4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...
SLX4_YEAS1 - Structure-specific endonuclease subunit SLX4 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=SLX4 PE...
SLX4_YEAS6 - Structure-specific endonuclease subunit SLX4 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=SLX4 P...
0.0 [1..748] [1..748]

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Predicted Domain #1
Region A:
Residues: [1-748]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELQRAQRNL KFLQNEDYVN VTDQTNLNGE SQNAYSLGME TQVPEMQFSL SSDDDSIGTQ  60
   61 VKSVTAQKSP MTQETTKNDT ERNKDVDKSC NPVSTSHPDL GGSNIEENIF INTQIQSRLD 120
  121 DAEEETNLKL KLEKFKYSFK SSNADDTHSN ANVTAKRRPA IRKANSKLKT KPKTKRDPKI 180
  181 IKNITDFNIN NYERSRTASL LKQLSGKHKK VLDIIKTQNE GNSDKPPRAR NNKGEKATFD 240
  241 TYSEQEWKDI MKLLLQKFPQ SEETDLNEVQ KFLYGSEKSS NSLDNQESSQ QRLWTASQLP 300
  301 PELPDEAIQP EQEERIRDTQ SAVNFLSLSQ VMDDKSEIMK DEESIIISRG DSTSSQEYGN 360
  361 GLEPQQPVGN VVGEDIELAV GTRINAFSLT DYKACKPMSV EVSRRCENST DNDYDNISIV 420
  421 SDTTDETSTL FPLDQYRYVF IENDERPPLA TDTIGSTQFF TPNTSPLDGI IDLTQESFKA 480
  481 VRSLISPLKV ENNKTGVTSQ ASNQVQVPAT RTPTIIPQKN LTTTLKTEEE KNNIGSSIRV 540
  541 KLLQESVVKL NPKLVKHNFY RVEANDSEEE ETEFDDQFCI ADIQLVDSSK ISTKDSTQNP 600
  601 TTSNDIIDTS AASSIASPEK FCEIMMSQSM KELRQSLKTV GLKPMRTKVE IIQSLQTASQ 660
  661 ILSTANPDNK GEHGGVANFS KIEIFDHLTE LIEAFPDFLE RIYTFEPIPL NELIEKLFSA 720
  721 EPFVSQIDEM TIREWADVQG ICLRNDKK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle