YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PDC5
Organism: Saccharomyces cerevisiae
Length: 563 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDC5.

Description E-value Query
Range
Subject
Range
gi|17232105, gi|... - gi|17232105|ref|NP_488653.1| acetolactate synthase 3 catalytic subunit [Nostoc sp. PCC 7120], gi|171...
gi|25291313 - pir||AE2382 acetohydroxy acid synthase [imported] - Nostoc sp. (strain PCC 7120)
0.0 [3..563] [32..600]
gi|7436698 - pir||C70341 acetolactate synthase (EC 4.1.3.18) large chain - Aquifex aeolicus
gi|15605942, gi|... - gi|2983101|gb|AAC06706.1| acetolactate synthase large subunit [Aquifex aeolicus VF5], gi|15605942|re...
0.0 [1..555] [1..563]
gi|6478277 - gi|6478277|gb|AAF13787.1|AF129501_2 acetohydroxy acid synthase large subunit [Buchnera aphidicola]
0.0 [1..557] [1..561]
Q66EL8|Q66EL8_YERPS - Acetolactate synthase III, valine sensitive, large subunit FAD and thiamine PPi binding - Yersinia p...
gi|77631655, gi|... - gi|77631655|ref|ZP_00794241.1| COG0028: Thiamine pyrophosphate-requiring enzymes [acetolactate synth...
gi|161511301 - gi|161511301|ref|NP_994917.2| acetolactate synthase 3 catalytic subunit [Yersinia pestis biovar Micr...
gi|161484748 - gi|161484748|ref|NP_670937.2| acetolactate synthase 3 catalytic subunit [Yersinia pestis KIM]
gi|186894031, gi... - gi|186894031|ref|YP_001871143.1| acetolactate synthase 3 catalytic subunit [Yersinia pseudotuberculo...
gi|169752280, gi... - gi|170025746|ref|YP_001722251.1| acetolactate synthase 3 catalytic subunit [Yersinia pseudotuberculo...
gi|229837069, gi... - gi|229837069|ref|ZP_04457234.1| acetolactate synthase isozyme III large subunit [Yersinia pestis Pes...
gi|150260425, gi... - gi|150260425|ref|ZP_01917153.1| acetolactate synthase isozyme III large subunit [Yersinia pestis CA8...
gi|229696794, gi... - gi|229840428|ref|ZP_04460587.1| acetolactate synthase isozyme III large subunit [Yersinia pestis bio...
gi|229843030, gi... - gi|229843030|ref|ZP_04463180.1| acetolactate synthase isozyme III large subunit [Yersinia pestis bio...
gi|89104759 - gi|89104759|ref|ZP_01177293.1| COG0028: Thiamine pyrophosphate-requiring enzymes [acetolactate synth...
gi|108809551, gi... - gi|108809551|ref|YP_653467.1| acetolactate synthase 3 catalytic subunit [Yersinia pestis Antiqua], g...
gi|77633509 - gi|77633509|ref|ZP_00795637.1| COG0028: Thiamine pyrophosphate-requiring enzymes [acetolactate synth...
gi|229682102, gi... - gi|229900763|ref|ZP_04515887.1| acetolactate synthase isozyme III large subunit [Yersinia pestis Nep...
gi|25291303 - pir||AI0066 acetolactate synthase (EC 4.1.3.18) isozyme III large chain [imported] - Yersinia pestis...
gi|218927736, gi... - gi|218927736|ref|YP_002345611.1| acetolactate synthase 3 catalytic subunit [Yersinia pestis CO92], g...
gi|51588307, gi|... - gi|51595025|ref|YP_069216.1| acetolactate synthase 3 catalytic subunit [Yersinia pseudotuberculosis ...
0.0 [1..562] [1..571]
ILVI_BUCAP - Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvI PE=3 S...
ILVI_BUCAP - Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN...
gi|3435164 - gi|3435164|gb|AAC32333.1| acetohydroxy acid synthase large subunit [Buchnera aphidicola]
0.0 [1..557] [1..561]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
0.0 [3..558] [11..572]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [1..562] [31..600]
ILVI_BUCAI - Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ilvI PE=3 S...
ILVI_BUCAI - Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) G...
gi|257471282|ref... - acetolactate synthase large subunit [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)]
gi|25291266 - gi|25291266|pir||F84956 acetolactate synthase (EC 4.1.3.18) large chain [imported] - Buchnera sp. (s...
gi|300658818|emb... - unnamed protein product [Buchnera aphidicola], unnamed protein product [Buchnera aphidicola]
gi|311086541|gb|... - acetolactate synthase large subunit [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)]
gi|219681597, gi... - gi|219681597|ref|YP_002467983.1| acetolactate synthase large subunit [Buchnera aphidicola str. 5A (A...
gi|219621887, gi... - gi|219682154|ref|YP_002468538.1| acetolactate synthase large subunit [Buchnera aphidicola str. Tuc7 ...
gi|311087122|gb|... - acetolactate synthase large subunit [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)]
0.0 [1..557] [1..561]
gi|25291271 - pir||A85490 hypothetical protein ilvI [imported] - Escherichia coli (strain O157:H7, substrain EDL9...
gi|12512777, gi|... - gi|15799761|ref|NP_285773.1| acetolactate synthase III large subunit [Escherichia coli O157:H7 EDL93...
0.0 [1..562] [29..598]

Back

Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEITLGKYL FERLSQVNCN TVFGLPGDFN LSLLDKLYEV KGMRWAGNAN ELNAAYAADG  60
   61 YARIKGMSCI ITTFGVGELS ALNGIAGSYA EHVGVLHVVG VPSISSQAKQ LLLHHTLGNG 120
  121 DFTVFHRMSA NISETTAMIT DIANAPAEID RCIRTTYTTQ RPVYLGLPAN LVDLNVPAKL 180
  181 LETPIDLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10162.0
Match: 1qpbA_
Description: Pyruvate decarboxylase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [189-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKPNDAEAEA EVVRTVVELI KDAKNPVILA DACASRHDVK AETKKLMDLT QFPVYVTPMG  60
   61 KGAIDEQHPR YGGVYVGTLS RPEVKKAVES ADLILSIGAL LSDFNTGSFS YSYKTKNIVE 120
  121 FHSDHIKIRN ATFPGVQMKF ALQKLLDAIP EVVKDYKPVA VPARV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10162.0
Match: 1qpbA_
Description: Pyruvate decarboxylase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [354-563]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PITKSTPANT PMKQEWMWNH LGNFLREGDI VIAETGTSAF GINQTTFPTD VYAIVQVLWG  60
   61 SIGFTVGALL GATMAAEELD PKKRVILFIG DGSLQLTVQE ISTMIRWGLK PYIFVLNNNG 120
  121 YTIEKLIHGP HAEYNEIQGW DHLALLPTFG ARNYETHRVA TTGEWEKLTQ DKDFQDNSKI 180
  181 RMIEVMLPVF DAPQNLVKQA QLTAATNAKQ 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10162.0
Match: 1qpbA_
Description: Pyruvate decarboxylase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle