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View Structure Prediction Details

Protein: CLF1
Organism: Saccharomyces cerevisiae
Length: 687 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLF1.

Description E-value Query
Range
Subject
Range
gi|113475191, gi... - gi|113475191|ref|YP_721252.1| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...
346.0 [0..13] [673..29]
gi|73670079, gi|... - gi|73670079|ref|YP_306094.1| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi|...
342.0 [0..12] [678..202]
gi|162317768 - gi|162317768|gb|AAI56790.1| Crooked neck pre-mRNA splicing factor-like 1 (Drosophila) [synthetic con...
CRNKL1 - crooked neck pre-mRNA splicing factor-like 1 (Drosophila)
324.0 [0..6] [685..182]
gi|118385554 - gi|118385554|ref|XP_001025906.1| TPR Domain containing protein [Tetrahymena thermophila]
gi|89307673, gi|... - gi|89307673|gb|EAS05661.1| TPR Domain containing protein [Tetrahymena thermophila SB210], gi|1183855...
323.0 [0..14] [679..356]
gi|76632544 - gi|76632544|ref|XP_604909.2| PREDICTED: similar to Crooked neck-like protein 1 (Crooked neck homolog...
318.0 [0..6] [685..127]

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Predicted Domain #1
Region A:
Residues: [1-154]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTLEPTAVD THVSAEQILR DVYKKGQKAR GSTNIDILDL EELREYQRRK RTEYEGYLKR  60
   61 NRLDMGQWIR YAQFEIEQHD MRRARSIFER ALLVDSSFIP LWIRYIDAEL KVKCINHARN 120
  121 LMNRAISTLP RVDKLWYKYL IVEESLNNVE IVRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.522879
Match: 1a17A
Description: TETRATRICOPEPTIDE REPEATS OF PROTEIN PHOSPHATASE 5
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [155-257]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LYTKWCSLEP GVNAWNSFVD FEIRQKNWNG VREIYSKYVM AHPQMQTWLK WVRFENRHGN  60
   61 TEFTRSVYSL AIDTVANLQN LQIWSDMEVA KLVNSFAHWE AAQ

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 13.98
Match:
Description: No description for 1ihgA was found.

Predicted Domain #3
Region A:
Residues: [258-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEYERSSALY QIAIEKWPSN QLLKAGLLDF EKQFGDINSI EETISYKRKM EYETILSNNA  60
   61 YDYDTWWLYL DLISESFPKQ IMQTFEKAIV DS

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 13.98
Match:
Description: No description for 1ihgA was found.

Predicted Domain #4
Region A:
Residues: [350-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPKELSKNVQ WKRYIYLWMR YICYVELELE NSLLEEELFQ RLIDDIIPHK HFTFSKIWLM  60
   61 YAKFLIRHDD VPKARKILGK AIGLCPKAKT FKGYIELEVK LK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1fchA
Description: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [452-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFDRVRKIYE KFIEFQPSDL QIWSQYGELE ENLGDWDRVR GIYTIALDEN SDFLTKEAKI  60
   61 VLLQKYITFE TESQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1fchA
Description: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
Matching Structure (courtesy of the PDB):

Predicted Domain #6
Region A:
Residues: [526-625]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFEKARKLYR RYLELNQYSP QSWIEFAMYQ TSTPTEQQLL DLAKLQSENV DEDIEFEITD  60
   61 ENKLEARKVF EEAIVFFKEK DDKQGRLSIL EALKDYEETY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.0
Match: 1fchA
Description: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
Matching Structure (courtesy of the PDB):

Predicted Domain #7
Region A:
Residues: [626-687]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTELDQETVK KRFPKVIKKV RLQNGVEEEF VDYIFPDDID DDKPKPSKFL ELAKKWKQEQ  60
   61 AL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle