YRC Public Data Repository - Protein Structure Prediction

Protein:	RFU1
Organism:	Saccharomyces cerevisiae
Length:	200 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFU1.

Description	E-value	Query Range	Subject Range
RFU1_CANGA - Regulator of free ubiquitin chains 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NB... RFU1_CANGA - Regulator of free ubiquitin chains 1 OS=Candida glabrata GN=RFU1 PE=3 SV=1	141.0	[0..1]	[128..1]
RFU1_KLULA - Regulator of free ubiquitin chains 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7079... RFU1_KLULA - Regulator of free ubiquitin chains 1 OS=Kluyveromyces lactis GN=RFU1 PE=3 SV=1	129.0	[0..1]	[200..1]
RFU1_ASHGO - Regulator of free ubiquitin chains 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 ... RFU1_ASHGO - Regulator of free ubiquitin chains 1 OS=Ashbya gossypii GN=RFU1 PE=3 SV=1	97.0	[0..1]	[161..1]
gi\|115384830, gi... - gi\|115384830\|ref\|XP_001208962.1\| hypothetical protein ATEG_01597 [Aspergillus terreus NIH2624], gi\|1...	57.0	[0..3]	[195..18]
gi\|40744398, gi\|... - gi\|67525091\|ref\|XP_660607.1\| hypothetical protein AN3003.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	57.0	[0..2]	[116..16]
gi\|116203997, gi... - gi\|88176010\|gb\|EAQ83478.1\| hypothetical protein CHGG_09882 [Chaetomium globosum CBS 148.51], gi\|1162...	54.0	[0..3]	[116..14]
gi\|85089649 - gi\|85089649\|ref\|XP_958045.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28919359, gi\|... - gi\|32413491\|ref\|XP_327225.1\| hypothetical protein [Neurospora crassa], gi\|28919359\|gb\|EAA28809.1\| hy...	50.0	[0..5]	[123..64]
gi\|159127751 - gi\|159127751\|gb\|EDP52866.1\| endosome-associated ubiquitin isopeptidase (AmsH), putative [Aspergillus... gi\|66852380, gi\|... - gi\|71000052\|ref\|XP_754743.1\| endosome-associated ubiquitin isopeptidase (AmsH) [Aspergillus fumigatu...	47.0	[0..2]	[140..7]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSKQLVQD AKDYRFNPAI PLRIYLKTCI GILEKAQCAF QANDLSLSFI YYFRYVDLLT  60
   61 NKLSRHPELL RMDASSSSSS SYIHKREYLQ LIKLEVPAVC KIIESLRTQI DSQYSKLQTS 120
  121 LANNIAKPNI NANTTPVQVE QQPLPKKSFD EYSFNQSISF FQKISNAQLN TGASSQSQAT 180
  181 ARDEAYRLNY PELPRLTFST

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.28
Match:	2a9uA
Description:	Structure of the N-terminal domain of Human Ubiquitin carboxyl-terminal hydrolase 8 (USP8)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits