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View Structure Prediction Details

Protein: RGR1
Organism: Saccharomyces cerevisiae
Length: 1082 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGR1.

Description E-value Query
Range
Subject
Range
RGR1 - Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form ...
MED14_YEAST - Mediator of RNA polymerase II transcription subunit 14 OS=Saccharomyces cerevisiae (strain ATCC 2045...
0.0 [1..1082] [1..1082]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [79..427] [3..324]
gi|6723955 - gi|6723955|emb|CAB66429.1| SPBC1A4.10c [Schizosaccharomyces pombe]
0.0 [79..427] [3..324]
gi|4580326 - gi|4580326|gb|AAD24360.1|AF135802_1 thyroid hormone receptor-associated protein complex component TR...
5.0E-99 [66..416] [25..340]
gi|4587087 - gi|4587087|dbj|BAA76610.1| unnamed protein product [Mus musculus]
8.0E-98 [70..416] [35..346]
MED14_ARATH - Mediator of RNA polymerase II transcription subunit 14 OS=Arabidopsis thaliana GN=MED14 PE=1 SV=1
9.0E-88 [104..424] [26..323]
gi|9937478 - gi|9937478|gb|AAG02462.1|AF289997_1 thyroid hormone receptor-associated protein TRAP170 [Drosophila ...
4.0E-40 [282..429] [1..127]

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Predicted Domain #1
Region A:
Residues: [1-224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTIGSPQM LANEERLSNE MHALKNRSEQ NGQEQQGPVK NTQLHGPSAT DPETTATQKE  60
   61 SLEMVPKDTS AATMTSAPPP ALPHVEINQV SLALVIRNLT VFTMKELAQY MKTNVHTQAN 120
  121 EPNSAKKIRF LQLIIFLRTQ FLKLYVLVKW TRTIKQNNFH VLIDLLNWFR TTNMNVNNCI 180
  181 WALKSSLNSM TNAKLPNVDL VTALEVLSLG RPNLPTHNFK LSGV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [225-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNSMDMVDGM AKVPIGLILQ RLKDLNLTVS IKIALMNIPK PLNSYHIKNG RIYFTVPNEF  60
   61 EIQLSTVNRQ SPLFFVDLKL LFNTEAEQTV SAVTEATSTN GDSENNEENS SSNGNNLPLN 120
  121 KPRLEKLINE ILLKSNDPLL SLYNFLHKYV LTLQLYMVHR EFLKLANGGK FSKSNLIHNY 180
  181 DSKKSTITVR YWLNGKMDSK GKITIGIQRT TESLILKWD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [444-1082]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQSASRAKNM PVIYNNIVSN IEGILDEIMF NHARIIRSEL LARDIFQEDE ENSDVLLFQL  60
   61 PTTCVSMAPI QLKIDLLSGQ FYFRNPTPLL SNYASKINRA EGPEELARIL QQLKLDKIIH 120
  121 VLTTMFENTG WSCSRIIKID KPIRTQVNTG GESVVKKEDN KYAIAGNSTT NSDVSLLLQR 180
  181 DLFIRLPHWP LNWYLILSII SSKTSCVVEK RIGKIVSQRG KWNLKYLDNS NVMTVKLESI 240
  241 TYQKIMILQR TILNRIINHM LIDSLNQLEI RNKICSSEMI NEQKLPQYII QGSNTNDNIS 300
  301 IITLELESFL EGSKALNSIL ESSMFLRIDY SNSQIRLYAK FKRNTMMIQC QIDKLYIHFV 360
  361 QEEPLAFYLE ESFTNLGIIV QYLTKFRQKL MQLVVLTDVV ERLHKNFESE NFKIIALQPN 420
  421 EISFKYLSNN DEDDKDCTIK ISTNDDSIKN LTVQLSPSNP QHIIQPFLDN SKMDYHFIFS 480
  481 YLQFTSSLFK ALKVILNERG GKFHESGSQY STMVNIGLHN LNEYQIVYYN PQAGTKITIC 540
  541 IELKTVLHNG RDKIQFHIHF ADVAHITTKS PAYPMMHQVR NQVFMLDTKR LGTPESVKPA 600
  601 NASHAIRLGN GVACDPSEIE PILMEIHNIL KVDSNSSSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle