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View Structure Prediction Details

Protein: FCF2
Organism: Saccharomyces cerevisiae
Length: 217 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FCF2.

Description E-value Query
Range
Subject
Range
FCF2 - Essential nucleolar protein involved in the early steps of 35S rRNA processing; interacts with Faf1p...
FCF2_YEAST - rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCF2 PE=1 S...
1.0E-64 [1..206] [1..206]
CG1142-PA - This gene is referred to in FlyBase by the symbol Dmel\CG1142 (CG1142, FBgn0037504). It is a protein...
gi|220958172, gi... - gi|220958172|gb|ACL91629.1| CG1142-PA [synthetic construct], gi|220949096|gb|ACL87091.1| CG1142-PA [...
1.0E-45 [3..198] [81..262]
CE25336 - status:Confirmed UniProt:Q9N4U1 protein_id:AAF60729.1
8.0E-45 [47..217] [78..241]
gi|27754411, gi|... - gi|28393935|gb|AAO42375.1| unknown protein [Arabidopsis thaliana], gi|27754411|gb|AAO22654.1| unknow...
3.0E-43 [45..217] [14..185]

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Predicted Domain #1
Region A:
Residues: [1-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQSVEDLFG ALRDASASLE VKNSAKEQVS LQQEDVLQIG NNDDEVEIES KFQEIETNLK  60
   61 KLPKLETGFD ALANKKKKKN VLPSVETEDK RKPNKSDKND NDWFTLPKPD DNMRREVQRD 120
  121 LLLIKHRAAL DPKRHYKKQR WEVPERFAIG TIIEDKSEFY SSRMNRKERK STILETLMGD 180
  181 EASNKYFKRK YNEIQEKSTS GRKAHYKKMK EMRKKRR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [86-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETEDKRKPNK SDKNDNDWFT LPKPDDNMRR EVQRDLLLIK HRAALDPKRH YKKQRWEVPE  60
   61 RFAIGTIIED KSEFYSSRMN RKERKSTILE TLMGDEASNK YFKRKYNEIQ EKSTSGRKAH 120
  121 YKKMKEMRKK RR

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 48.259637
Match: PF08698.2
Description: No description for PF08698.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle