YRC Public Data Repository - Protein Structure Prediction

Protein:	YLR040C
Organism:	Saccharomyces cerevisiae
Length:	224 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLR040C.

Description	E-value	Query Range	Subject Range
YLR040C - Putative protein of unknown function; localizes to the cell wall; predicted to be a GPI-attached pro... YL040_YEAST - Cell wall protein YLR040C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR040C PE=3 S... gi\|151941209 - gi\|151941209\|gb\|EDN59587.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190406080 - gi\|190406080\|gb\|EDV09347.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|207343173 - gi\|207343173\|gb\|EDZ70719.1\| YLR040Cp-like protein [Saccharomyces cerevisiae AWRI1631]	3.0E-87	[1..224]	[1..224]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFAPSFSLI KNILLVSFLI SHSFAAKTLT SSSNDDTLAR SAAADADMAF FMEFLNDFDT  60
   61 AFPQYTSYMM QNHLTLPQPV ADYYYHMVDL ASTADLQSDI AQSFPFTQFQ TFITAFPWYT 120
  121 SLLNKASATT IYLPQHFITG ETEATMTNSS YASQKNSVSN SVPFSTANAG QSMISMANEE 180
  181 NSTTALISAS NSSSTSRTSQ SQNGAHAKSL YFPMALFGIF AVAL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits