YRC Public Data Repository - Protein Structure Prediction

Protein:	SNF7
Organism:	Saccharomyces cerevisiae
Length:	240 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNF7.

Description	E-value	Query Range	Subject Range
CE06928 - WBGene00016497 status:Predicted TR:Q22916 protein_id:AAC25860.1	3.0E-38	[1..225]	[51..261]
gi\|4680707 - gi\|4680707\|gb\|AAD27743.1\|AF132968_1 CGI-34 protein [Homo sapiens]	2.0E-37	[2..198]	[1..197]
gi\|9758460, gi\|2... - gi\|9758460\|dbj\|BAB08989.1\| unnamed protein product [Arabidopsis thaliana], gi\|23296841\|gb\|AAN13183.1...	2.0E-37	[2..219]	[1..222]
CHMP5_MOUSE - Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1 CHMP5_RAT - Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1	2.0E-36	[2..198]	[1..198]
gi\|190406066 - gi\|190406066\|gb\|EDV09333.1\| vacuolar sorting protein SNF7 [Saccharomyces cerevisiae RM11-1a] SNF7 - One of four subunits of the endosomal sorting complex required for transport III (ESCRT-III); involv... SNF7_YEAST - Vacuolar-sorting protein SNF7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF7 PE=1 ... gi\|151941194 - gi\|151941194\|gb\|EDN59572.1\| endosomal sorting complex subunit [Saccharomyces cerevisiae YJM789]	8.0E-36	[1..240]	[1..240]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSSLFGWTS SNAKNKESPT KAIVRLREHI NLLSKKQSHL RTQITNQENE ARIFLTKGNK  60
   61 VMAKNALKKK KTIEQLLSKV EGTMESMEQQ LFSIESANLN LETMRAMQEG AKAMKTIHSG 120
  121 LDIDKVDETM DEIREQVELG DEISDAISRP LITGANEVDE DELDEELDML AQENANQETS 180
  181 KIVNNNVNAA PISENKVSLP SVPSNKIKQS ENSVKDGEEE EDEEDEDEKA LRELQAEMGL 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.522879
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits