YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: POM34
Organism: Saccharomyces cerevisiae
Length: 299 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POM34.

Description E-value Query
Range
Subject
Range
gi|190406059 - gi|190406059|gb|EDV09326.1| nucleoporin POM34 [Saccharomyces cerevisiae RM11-1a]
POM34_YEAST - Nucleoporin POM34 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POM34 PE=1 SV=1
gi|151941186 - gi|151941186|gb|EDN59564.1| nuclear pore complex subunit [Saccharomyces cerevisiae YJM789]
POM34 - Integral membrane protein of the nuclear pore; has an important role in maintaining the architecture...
0.0 [1..299] [1..299]

Back

Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIQAGQLGL DDNDVPGPLP DTDSKPSSQS QNDTPMFKLG NFESPVLKEL SRRTVNKEME  60
   61 TQRIMTNVIA FAFWNLLVKF IKFFWNNTHV GRQFCNRLSR IHLYMLTFHT LKKANIIYHT 120
  121 TFSWLNAELL DYLFHLLISL NILFSLWKLL STVKVSDLNL TDRQKKLLGV DMQSSVDTG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [180-299]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQPQHPHYVS TSKISQMAQN KTHIPQTNLK NHPAYLFKGL ETPLKARQRE MAEEQTKLQS  60
   61 QSLHTKNVFG TLQRHSGISS TLVSANNDNN SPHTPVTRKG YIPSSKYAYM MNSQSPRGKI 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle