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View Structure Prediction Details

Protein: LOT6
Organism: Saccharomyces cerevisiae
Length: 191 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOT6.

Description E-value Query
Range
Subject
Range
gi|207343213 - gi|207343213|gb|EDZ70745.1| YLR011Wp-like protein [Saccharomyces cerevisiae AWRI1631]
LOT6_YEAST - NAD(P)H-dependent FMN reductase LOT6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LOT...
gi|190406052 - gi|190406052|gb|EDV09319.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|151941179 - gi|151941179|gb|EDN59557.1| low temperature-responsive protein [Saccharomyces cerevisiae YJM789]
LOT6 - FMN-dependent NAD(P)H:quinone reductase, may be involved in quinone detoxification; expression eleva...
2.0E-38 [1..191] [1..191]
gi|25329238 - pir||D97330 multimeric flavodoxin WrbA family protein [imported] - Clostridium acetobutylicum
gi|15026597, gi|... - gi|15896742|ref|NP_350091.1| multimeric flavodoxin WrbA family protein [Clostridium acetobutylicum A...
3.0E-30 [1..190] [1..189]
gi|17938906, gi|... - gi|17938906|ref|NP_535694.1| hypothetical protein Atu5322 [Agrobacterium tumefaciens str. C58], gi|1...
gi|25374306 - pir||AD3199 conserved hypothetical protein Atu5322 [imported] - Agrobacterium tumefaciens (strain C5...
3.0E-30 [2..188] [30..202]
gi|41327092, gi|... - gi|62391750|ref|YP_227152.1| NADPH-dependent FMN reductase [Corynebacterium glutamicum ATCC 13032], ...
5.0E-30 [1..190] [1..181]
ARREH_RHIME - NADPH-dependent FMN reductase ArsH OS=Rhizobium meliloti (strain 1021) GN=arsH PE=1 SV=1
gi|15074006 - gi|15074006|emb|CAC45653.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
2.0E-29 [2..188] [36..208]
gi|11691636 - gi|11691636|emb|CAC18655.1| ArsH protein [Pseudomonas putida]
2.0E-29 [2..188] [24..196]
gi|17232269, gi|... - gi|17232269|ref|NP_488817.1| hypothetical protein alr4777 [Nostoc sp. PCC 7120], gi|17133914|dbj|BAB...
gi|25535566 - pir||AI2402 hypothetical protein alr4777 [imported] - Nostoc sp. (strain PCC 7120)
5.0E-29 [1..189] [2..175]
gi|11347879 - pir||A83362 conserved hypothetical protein PA2280 [imported] - Pseudomonas aeruginosa (strain PAO1)
gi|9948309, gi|1... - gi|9948309|gb|AAG05668.1|AE004653_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], g...
1.0E-28 [2..188] [25..197]

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Predicted Domain #1
Region A:
Residues: [1-191]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVGIIMGSV RAKRVCPEIA AYVKRTIENS EELIDQKLKI QVVDLQQIAL PLYEDDDELI  60
   61 PAQIKSVDEY ADSKTRSWSR IVNALDIIVF VTPQYNWGYP AALKNAIDRL YHEWHGKPAL 120
  121 VVSYGGHGGS KCNDQLQEVL HGLKMNVIGG VAVKIPVGTI PLPEDIVPQL SVHNEEILQL 180
  181 LASCIETTRN K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.154902
Match: 1qrdA_
Description: NAD(P)H:quinone reductase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle