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View Structure Prediction Details

Protein: CMS1
Organism: Saccharomyces cerevisiae
Length: 291 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CMS1.

Description E-value Query
Range
Subject
Range
gi|151941171 - gi|151941171|gb|EDN59549.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406044 - gi|190406044|gb|EDV09311.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
CMS1 - Subunit of U3-containing 90S preribosome processome complex involved in production of 18S rRNA and a...
CMS1_YEAST - Protein CMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CMS1 PE=1 SV=1
0.0 [1..291] [1..291]
psa-4 - SNF2alpha like status:Confirmed UniProt:Q19106 protein_id:CAA92978.1
0.007 [4..120] [1081..1200]

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Predicted Domain #1
Region A:
Residues: [1-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPDDLDDG LAYDFDAEHE VIFDAKDGSP PTKKVQKRSI EQDDDDVDDI DGKKEERNSE  60
   61 DDSNRPISKR QKKLQKKSKL IEKKKEESQY IVSQRKALPA SSPEKIIEYL TTLIREKNPD 120
  121 LSVLELEELY FKRNDFLSTE KFDAERRLSN FPAFIQKFSV APKKIVFSMS NIRVADVYRS 180
  181 LNGGKNCVKL FSKSKLKDDI ATVERLLTDS SKKSNKNKDS LYFIATPTRM QKIIEATDLL 240
  241 FQGKEKLDII LDASYLDPKD NTILSFENAA VLCQVLKTFL NKKSSVKILL Y

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [66-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PISKRQKKLQ KKSKLIEKKK EESQYIVSQR KALPASSPEK IIEYLTTLIR EKNPDLSVLE  60
   61 LEELYFKRND FLSTEKFDAE RRLSNFPAFI QKFSVAPKKI VFSMSNIRVA DVYRSLNGGK 120
  121 NCVKLFSKSK LKDDIATVER LLTDSSKKSN KNKDSLYFIA TPTRMQKIIE ATDLLFQGKE 180
  181 KLDIILDASY LDPKDNTILS FENAAVLCQV LKTFLNKKSS VKILLY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.43
Match: 1wrbA
Description: Crystal structure of the N-terminal RecA-like domain of DjVLGB, a pranarian Vasa-like RNA helicase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle