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View Structure Prediction Details

Protein: LDB18
Organism: Saccharomyces cerevisiae
Length: 179 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LDB18.

Description E-value Query
Range
Subject
Range
LDB18 - Component of the dynactin complex, which is required for dynein activity; null mutant exhibits defec...
LDB18_YEAST - Protein LDB18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LDB18 PE=1 SV=1
gi|190406003 - gi|190406003|gb|EDV09270.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|207343283 - gi|207343283|gb|EDZ70793.1| YLL049Wp-like protein [Saccharomyces cerevisiae AWRI1631]
6.0E-98 [1..179] [1..179]

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Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGLKLVEAL EYRCDRLERL IGAGYSANSD VSVQLDELYN QLHRLYFQGL KYSQDLLQLF  60
   61 NTFMAEDIEN VGAPDDICIF ASCFDDIYTL YSAFDELNSQ YMEFCQISKS SLDQISFKDA 120
  121 NIETKQLKKL PELVDNCNIM ILRSIAILNR FIDWNIEVNG FFQFQKKRLL NLQKVIYST

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Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle