YRC Public Data Repository - Protein Structure Prediction

Protein:	SDH2
Organism:	Saccharomyces cerevisiae
Length:	266 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDH2.

Description	E-value	Query Range	Subject Range
gi\|25284631 - pir\|\|D87686 succinate dehydrogenase, iron-sulfur protein [imported] - Caulobacter crescentus gi\|16127756, gi\|... - gi\|16127756\|ref\|NP_422320.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter crescentus CB1... gi\|220965750, gi... - gi\|221236577\|ref\|YP_002519014.1\| succinate dehydrogenase iron-sulfur protein [Caulobacter crescentus...	5.0E-76	[4..265]	[2..257]
SDHB_CHICK - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=...	6.0E-76	[8..264]	[24..281]
gi\|665925, gi\|92... - gi\|9257242\|ref\|NP_002991.1\| succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Homo sapie...	1.0E-75	[1..264]	[4..271]
SDHB_MOUSE - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mus musculus GN=Sdhb PE=1...	2.0E-74	[2..264]	[5..273]
gi\|151941130 - gi\|151941130\|gb\|EDN59508.1\| succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit [Saccha... SDHB_YEAST - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Saccharomyces cerevisiae ... gi\|207343274 - gi\|207343274\|gb\|EDZ70786.1\| YLL041Cp-like protein [Saccharomyces cerevisiae AWRI1631] SDH2 - Iron-sulfur protein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples t... gi\|190406009 - gi\|190406009\|gb\|EDV09276.1\| succinate dehydrogenase iron-sulfur protein subunit [Saccharomyces cerev...	1.0E-73	[1..266]	[1..266]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-73	[18..264]	[6..253]
gi\|25284642, gi\|... - pir\|\|AI2900 succinate dehydrogenase iron-sulfur sdhB [imported] - Agrobacterium tumefaciens (strain ... gi\|15889898, gi\|... - gi\|17936517\|ref\|NP_533307.1\| succinate dehydrogenase catalytic subunit [Agrobacterium tumefaciens st...	9.0E-72	[4..265]	[2..256]
gi\|113873566, gi... - gi\|150398153\|ref\|YP_001328620.1\| succinate dehydrogenase iron-sulfur subunit [Sinorhizobium medicae ... gi\|15966822 - gi\|15966822\|ref\|NP_387175.1\| succinate dehydrogenase iron-sulfur subunit [Sinorhizobium meliloti 102... gi\|15076094 - gi\|15076094\|emb\|CAC47648.1\| Probable succinate dehydrogenase iron-sulfur protein [Sinorhizobium meli...	3.0E-71	[4..265]	[2..256]
DHSB_RICPR - Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia prowazekii GN=sdhB PE=3 SV=1 SDHB_RICPR - Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia prowazekii (strain Madrid E) GN=sdhB PE=3 ...	4.0E-71	[4..265]	[2..257]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNVLLRRKA FCLVTKKGMA TATTAAATHT PRLKTFKVYR WNPDEPSAKP HLQSYQVDLN  60
   61 DCGPMVLDAL LKIKDEQDST LTFRRSCREG ICGSCAMNIG GRNTLACICK IDQNESKQLK 120
  121 IYPLPHMFIV KDLVPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	341.502279
Match:	1kf6B_
Description:	Fumarate reductase; Fumarate reductase iron-sulfur protein, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [137-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTNFYQQYKS IQPYLQRSSF PKDGTEVLQS IEDRKKLDGL YECILCACCS TSCPSYWWNQ  60
   61 EQYLGPAVLM QAYRWLIDSR DQATKTRKAM LNNSMSLYRC HTIMNCTRTC PKGLNPGLAI 120
  121 AEIKKSLAFA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	341.502279
Match:	1kf6B_
Description:	Fumarate reductase; Fumarate reductase iron-sulfur protein, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits