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View Structure Prediction Details

Protein: GRC3
Organism: Saccharomyces cerevisiae
Length: 632 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRC3.

Description E-value Query
Range		 Subject
Range
GRC3_YEAST - Polynucleotide 5'-hydroxyl-kinase GRC3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=G...
GRC3 - Protein of unknown function, required for cell growth and possibly involved in rRNA processing; mRNA...
 0.0 [1..632] [1..632]
GRC3_SCHPO - Polynucleotide 5'-hydroxyl-kinase grc3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=grc...
SPCC830.03 - AAA family ATPase Grc3
 0.0 [32..583] [118..690]
gi|17944386 - gi|17944386|gb|AAL48084.1| RE71565p [Drosophila melanogaster]
 0.0 [1..564] [377..931]
NOL9_ARATH - Polynucleotide 5'-hydroxyl-kinase NOL9 OS=Arabidopsis thaliana GN=At5g11010 PE=2 SV=1
 2.0E-80 [218..585] [11..348]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 4.0E-79 [218..585] [11..360]
gi|12852502, gi|... - gi|21311971|ref|NP_083003.1| nucleolar protein 9 [Mus musculus], gi|12852502|dbj|BAB29433.1| unnamed...
 9.0E-79 [236..587] [312..667]
CLP1_MACFA - Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Macaca fascicularis GN=CLP1 PE=2 SV=1
gi|109106241 - gi|109106241|ref|XP_001101762.1| PREDICTED: ATP/GTP-binding protein [Macaca mulatta]
CCDS7964.1_1 - null
ENSCJAT00000016978 - null
CLP1 - CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae)
 9.0E-70 [224..564] [98..414]

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Predicted Domain #1
Region A:
Residues: [1-196] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIDSKQDLP QYTKDSGSES DSDSSNNFIV ESPSIPSSKS ATVVLNSEEY EDDEGDDLNG  60
   61 LDAELIDNIT YEGDEDETMF VGLKEKQKLH LSGVFRLQVV KGGIVYNNVH YNASREILTF 120
  121 WHPLSQSIPT IDFSHFAGWQ DTFFMPRNNR FKIRDEEFKS FPCVLRVFNS NHTGLLEAGH 180
  181 LYRDVNYLWK PKEPYF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [197-401] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLNERTTYHL LHESDRIQSL SVPGYWSTPL EKLYLSHKNA AYDTRIMVIG GKNSGKSTFL  60
   61 RLLLEKFTQD IRDSTTSQEE LVYLDLDPGQ PEYSLPDSIS LNKILSSPIS LGQHLCQGSN 120
  121 FQTLLQFYAG SSSPQDEPTS YLNCADKLID HLEEQAFFGT SLLNLPGWIK GFGMQILNHI 180
  181 IRKYKPTHLL FLETANSKRH LDELT

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 9.02
Match: 1jsqA
Description: MsbA
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [402-632] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPQSFSTSLR DAYAPEVVRV PAHSLNHTLS SRFHASQLRT FKILALFHKI TQFDYDFAPL  60
   61 LKSAPLQISY GKGKSGIKGI QFPMEFQDLN PQDIKSALEG TVIGIYTYSG EDSLEVKSLN 120
  121 TFPILQSCTS SSKNFITLGL IHSIDTSQQI MNIYVPPCHT QILDKQPEDA QWIIVRNKTE 180
  181 TPFCDFLPSP RTITWDDNIQ IPFATFERRK KLEHVWKVRK NVMRRGQFMK R

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle