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View Structure Prediction Details

Protein: RRT7
Organism: Saccharomyces cerevisiae
Length: 113 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RRT7.

Description E-value Query
Range
Subject
Range
gi|45270274 - gi|45270274|gb|AAS56518.1| YLL030C [Saccharomyces cerevisiae]
173.0 [0..1] [113..1]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYFAFKGLCG RRFLPIASFL TILNRILFQY WLFYNSLKEE KTFQKIFFSM NLKCRKKKEP  60
   61 NHIIYSQPPF LLGFMVQLQS CVKLLPLYLL FLLQGNGAHY ASAMTSKVLS FFL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.535 a.7.5 Tubulin chaperone cofactor A
View Download 0.535 a.7.5 Tubulin chaperone cofactor A
View Download 0.493 f.17.2 Cytochrome c oxidase subunit II-like, transmembrane region
View Download 0.493 f.17.2 Cytochrome c oxidase subunit II-like, transmembrane region
View Download 0.483 a.25.1 Ferritin-like
View Download 0.461 a.48.1 N-terminal domain of cbl (N-cbl)
View Download 0.433 d.240.1 Description not found.
View Download 0.428 a.48.1 N-terminal domain of cbl (N-cbl)
View Download 0.352 d.188.1 Prokaryotic ribosomal protein L17
View Download 0.327 a.41.1 Domain of poly(ADP-ribose) polymerase


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle