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View Structure Prediction Details

Protein: FRA1
Organism: Saccharomyces cerevisiae
Length: 749 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRA1.

Description E-value Query
Range
Subject
Range
gi|50288213, gi|... - gi|50288213|ref|XP_446535.1| unnamed protein product [Candida glabrata], gi|49525843|emb|CAG59462.1|...
gi|49525843 - gi|49525843|emb|CAG59462.1| unnamed protein product [Candida glabrata]
639.0 [0..18] [748..16]
gi|49645029 - gi|49645029|emb|CAG98601.1| KLLA0F18128p [Kluyveromyces lactis]
gi|50311731, gi|... - gi|50311731|ref|XP_455893.1| unnamed protein product [Kluyveromyces lactis], gi|49645029|emb|CAG9860...
616.0 [0..14] [749..9]
gi|44985847 - gi|44985847|gb|AAS54458.1| AGL032Cp [Ashbya gossypii ATCC 10895]
gi|44985847, gi|... - gi|45201064|ref|NP_986634.1| AGL032Cp [Ashbya gossypii ATCC 10895], gi|44985847|gb|AAS54458.1| AGL03...
605.0 [0..33] [747..31]
XPP1_RAT - Xaa-Pro aminopeptidase 1 OS=Rattus norvegicus GN=Xpnpep1 PE=1 SV=1
579.0 [0..105] [749..6]
ENSPTRT00000005590 - null
gi|157929160, gi... - gi|157929160|gb|ABW03865.1| X-prolyl aminopeptidase (aminopeptidase P) 1, soluble [synthetic constru...
XPNPEP1 - X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
574.0 [0..105] [749..6]
gi|148669738, gi... - gi|74204048|dbj|BAE29019.1| unnamed protein product [Mus musculus], gi|148669738|gb|EDL01685.1| X-pr...
573.0 [0..105] [749..49]
gi|24111421, gi|... - gi|24111421|gb|AAN46861.1| At3g05350/T12H1_32 [Arabidopsis thaliana], gi|240255284|ref|NP_187186.5| ...
572.0 [0..88] [749..62]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKPSTSDG RAHSISHVPG THMRGTSASH SPRPFRPCAD CTCSPGLLSR QGRRASLFLR  60
   61 QLENSRRSSS MLLNELKGAG GGS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-277]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAGNGSVYSC DSLCAVNREV NTTDRLLKLR QEMKKHDLCC YIVPSCDEHQ SEYVSLRDQR  60
   61 RAFISGFSGS AGVACITRDL LNFNDDHPDG KSILSTDGRY FNQARQELDY NWTLLRQNED 120
  121 PITWQEWCVR EALEMAKGLG NKEGMVLKIG IDPKLITFND YVSFRKMIDT KYDAKGKVEL 180
  181 VPVEENLVDS IWPD

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 8.2
Match:
Description: No description for 1chmA was found.

Predicted Domain #3
Region A:
Residues: [278-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FETLPERPCN DLLLLKYEFH GEEFKDKKEK LLKKLNDKAS SATTGRNTFI VVALDEICWL  60
   61 LNLRGSDIDY NPVFFSYVAI NEDETILFTN NPFNDDISEY FKINGIEVRP YEQIWEHLTK 120
  121 ITSQASSAEH EFLIPDSASW QMVRCLNTST NANGAIAKKM TAQNFAIIHS PIDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.30103
Match: 1jawA
Description: AMINOPEPTIDASE P FROM E. COLI LOW PH FORM
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [452-749]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKSIKNDIEI KNAHKAQVKD AVCLVQYFAW LEQQLVGREA LIDEYRAAEK LTEIRKTQRN  60
   61 FMGNSFETIS STGSNAAIIH YSPPVENSSM IDPTKIYLCD SGSQFLEGTT DITRTIHLTK 120
  121 PTKEEMDNYT LVLKGGLALE RLIFPENTPG FNIDAIARQF LWSRGLDYKH GTGHGIGSFL 180
  181 NVHEGPMGVG FRPHLMNFPL RAGNIISNEP GYYKDGEYGI RIESDMLIKK ATEKGNFLKF 240
  241 ENMTVVPYCR KLINTKLLNE EEKTQINEYH ARVWRTIVHF LQPQSISYKW LKRETSPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.30103
Match: 1jawA
Description: AMINOPEPTIDASE P FROM E. COLI LOW PH FORM
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle