YRC Public Data Repository - Protein Structure Prediction

Protein:	TVP38
Organism:	Saccharomyces cerevisiae
Length:	337 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TVP38.

Description	E-value	Query Range	Subject Range
gi\|220956108 - gi\|220956108\|gb\|ACL90597.1\| CG11367-PA [synthetic construct] CG11367-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11367 (CG11367, FBgn0037185). It is a prote...	200.0	[0..33]	[324..56]
gi\|16323326, gi\|... - gi\|23505925\|gb\|AAN28822.1\| At2g02370/T16F16.16 [Arabidopsis thaliana], gi\|20197339\|gb\|AAC78519.2\| ex...	198.0	[0..49]	[337..13]
gi\|436224 - gi\|436224\|dbj\|BAA05062.1\| KIAA0033 [Homo sapiens]	165.0	[0..40]	[316..49]
TM41B_PONAB - Transmembrane protein 41B OS=Pongo abelii GN=TMEM41B PE=2 SV=1 TM41B_PONPY - Transmembrane protein 41B - Pongo pygmaeus (Orangutan)	156.0	[0..40]	[316..5]
gi\|17229699, gi\|... - gi\|17229699\|ref\|NP_486247.1\| hypothetical protein alr2207 [Nostoc sp. PCC 7120], gi\|17131298\|dbj\|BAB... gi\|25326049 - pir\|\|AI2081 hypothetical protein alr2207 [imported] - Nostoc sp. (strain PCC 7120)	154.0	[0..88]	[328..27]
TVP38_CANGA - Golgi apparatus membrane protein TVP38 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / ... TVP38_CANGA - Golgi apparatus membrane protein TVP38 OS=Candida glabrata GN=TVP38 PE=3 SV=1	147.0	[0..9]	[337..5]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSYEAGNA NMGQGEDDEF DGYFEDFDND IMPNSNNGQR VGTNAGLSFN DEVNVNDDDF  60
   61 LDIYNMSPRE RLMHNIRKNV QKLQFYFYSL RLWQQIIIVL LGIMLMIMGI LLLVFHNAIL 120
  121 HKVVVTSNDL REKMSTHFIL MVLIFFVA

[Run NCBI BLAST on this sequence.]

Detection Method:	ab initio
Confidence:	7.55
Match:
Description:	No description for 1hu3A was found.

Predicted Domain #2

Region A:
Residues: [149-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPPMIGYSLL STTTGLIYGV SFEGWVTLAL GSVTGSIASF VVFKTILHSR AEKLVHLNRR  60
   61 FEALASILQE NNSYWILALL RLCPFPYSLT NGAIAGVYGI SVRNFSIANI ITTPKLFIYL 120
  121 FIGSRVKSLA ESESTGSRVF DLVSIIITLL ILSLTAWLLY FKTKKRYLEL QNRDRQVSTD 180
  181 QLPELSFEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits