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View Structure Prediction Details

Protein: MSA2
Organism: Saccharomyces cerevisiae
Length: 363 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSA2.

Description E-value Query
Range
Subject
Range
gi|151941616 - gi|151941616|gb|EDN59979.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|207343337 - gi|207343337|gb|EDZ70822.1| YKR077Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190409889 - gi|190409889|gb|EDV13154.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
MSA2_YEAST - Putative transcriptional activator MSA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...
MSA2 - Putative transcriptional activator, that interacts with G1-specific transcription factor, MBF and G1...
0.0 [1..363] [1..363]

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Predicted Domain #1
Region A:
Residues: [1-363]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYTTPQQQQ RFSSTPQSSH TLIFSPIRAP SMQTPSSLDY QSPSIVVSSS SMKVHGRSSS  60
   61 FGKFSLSIGQ NGKATILGPI NVLPTDTSKM EKPVPKKKPV TSDRVEKTRI LSLLKKMRNK 120
  121 SSTVNKKYSK VPLKSTTSLQ PAATAPSPLV SNIIKPSPKK LASPRTPNAN SNLNLNFTSF 180
  181 QIKTGFTPNL DGILLENFTS PNTTADSQGN SASNIINNNH GSANNTNQFL FNLPLQSSPR 240
  241 QFRSPARLID PLPISDWNTS LLMSPPRTTN FESANNHFNS NFAQASMLRR PSLPHIDEVI 300
  301 PQDSNPANYS DRSDYLSVDQ NANNHNGALS EQTYNNIMKS SMISLPIEKD DATMALRKLV 360
  361 SRE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle