YRC Public Data Repository - Protein Structure Prediction

Protein:	MRS4
Organism:	Saccharomyces cerevisiae
Length:	304 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRS4.

Description	E-value	Query Range	Subject Range
SLC25A31 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 gi\|117645348 - gi\|117645348\|emb\|CAL38140.1\| hypothetical protein [synthetic construct] HGNC:25319\|MIM:6... - carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	3.0E-80	[10..302]	[4..309]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-80	[6..301]	[178..470]
UCP3_BOVIN - Mitochondrial uncoupling protein 3 OS=Bos taurus GN=UCP3 PE=2 SV=1	9.0E-80	[15..303]	[5..302]
UCP3_RAT - Mitochondrial uncoupling protein 3 OS=Rattus norvegicus GN=Ucp3 PE=2 SV=1	2.0E-79	[15..303]	[5..299]
UCP3_MOUSE - Mitochondrial uncoupling protein 3 OS=Mus musculus GN=Ucp3 PE=1 SV=1	3.0E-79	[15..303]	[5..299]

Back

Predicted Domain #1

Region A:
Residues: [1-304]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSELSIAE EIDYEALPSH APLHSQLLAG AFAGIMEHSL MFPIDALKTR VQAAGLNKAA  60
   61 STGMISQISK ISTMEGSMAL WKGVQSVILG AGPAHAVYFG TYEFCKARLI SPEDMQTHQP 120
  121 MKTALSGTIA TIAADALMNP FDTVKQRLQL DTNLRVWNVT KQIYQNEGFA AFYYSYPTTL 180
  181 AMNIPFAAFN FMIYESASKF FNPQNSYNPL IHCLCGGISG ATCAALTTPL DCIKTVLQVR 240
  241 GSETVSIEIM KDANTFGRAS RAILEVHGWK GFWRGLKPRI VANIPATAIS WTAYECAKHF 300
  301 LMKN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.04
Match:	1is2A
Description:	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4; Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits