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View Structure Prediction Details

Protein: DID2
Organism: Saccharomyces cerevisiae
Length: 204 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DID2.

Description E-value Query
Range		 Subject
Range
VPS2C_ARATH - Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
 8.0E-35 [4..203] [9..210]
CE06928 - WBGene00016497 status:Predicted TR:Q22916 protein_id:AAC25860.1
 2.0E-34 [1..196] [59..258]
gi|125532355 - gi|125532355|gb|EAY78920.1| hypothetical protein OsI_34021 [Oryza sativa Indica Group]
gi|37535360, gi|... - gi|37535360|ref|NP_921982.1| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi|31432...
 1.0E-33 [5..203] [10..210]
gi|4680707 - gi|4680707|gb|AAD27743.1|AF132968_1 CGI-34 protein [Homo sapiens]
 3.0E-33 [3..189] [11..203]
IPI:IPI00214716.... - Ensembl_locations(Chr-bp):3-137838195
CHM4B_MOUSE - Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=1 SV=2
 4.0E-33 [7..197] [20..216]

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Predicted Domain #1
Region A:
Residues: [1-80] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRNSAAGLE NTLFQLKFTS KQLQKQANKA SKEEKQETNK LKRALNENED ISRIYASNAI  60
   61 RKKNERLQLL KLASRVDSVA

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.93
Match: 1cunA
Description: Spectrin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [81-204] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRVQTAVTMR QVSASMGQVC KGMDKALQNM NLQQITMIMD KFEQQFEDLD TSVNVYEDMG  60
   61 VNSDAMLVDN DKVDELMSKV ADENGMELKQ SAKLDNVPEI KAKEVNVDDE KEDKLAQRLR 120
  121 ALRG

[Run NCBI BLAST on this sequence.]

Detection Method: ORFEUS
Confidence: 7.93
Match: 1cunA
Description: Spectrin
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle