YRC Public Data Repository - Protein Structure Prediction

Protein:	YKR011C
Organism:	Saccharomyces cerevisiae
Length:	353 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKR011C.

Description	E-value	Query Range	Subject Range
gi\|3518 - gi\|3518\|emb\|CAA46241.1\| ORF YK110 [Saccharomyces cerevisiae]	414.0	[0..141]	[353..1]
gi\|49524413 - gi\|49524413\|emb\|CAG58010.1\| unnamed protein product [Candida glabrata] gi\|50285363, gi\|... - gi\|50285363\|ref\|XP_445110.1\| unnamed protein product [Candida glabrata], gi\|49524413\|emb\|CAG58010.1\|...	115.0	[0..5]	[337..4]
gi\|45184644, gi\|... - gi\|45184644\|ref\|NP_982362.1\| AAL180Cp [Ashbya gossypii ATCC 10895], gi\|44979990\|gb\|AAS50186.1\| AAL18... gi\|44979990 - gi\|44979990\|gb\|AAS50186.1\| AAL180Cp [Ashbya gossypii ATCC 10895]	108.0	[0..3]	[326..8]
gi\|50305313, gi\|... - gi\|50305313\|ref\|XP_452616.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641749\|emb\|CAH0146... gi\|49641749 - gi\|49641749\|emb\|CAH01467.1\| KLLA0C09372p [Kluyveromyces lactis]	92.0	[0..4]	[349..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKLETVYLY AGEEQPRVKL TCIKEGLTLT QVIKFVHSIQ ELYGIELQTS ETITENLKID  60
   61 CAPAYLKPNC IPHFYILEYE EISDTFFIWK SDGRWQLNKL SALLYVDNDA NVVKNTSWKE 120
  121 VFQNDQRFKN Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [132-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKRAWLQNCL EKMNRDLSKL NVEQFWSQYD KICQSIAKQK KKQEQFNMEV FDNFKNIVSI  60
   61 AIIKTKVLSN KRLLTTTLKN YHNSMKKKYN IQEQNLKENS LASCSNNEPS ASLESESRHF 120
  121 SPVNSLSPSS LSTDDEAVST DYIYKGPESK PNVNFMHSSA TNDLIKSNFE SYFKLMAEDY 180
  181 ETFDLRAWSR QRPRKFQLVE KKKITKNPPN SHHPHKNGKI SF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits