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View Structure Prediction Details

Protein: YKR005C
Organism: Saccharomyces cerevisiae
Length: 447 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

No multiple sequence alignment data found for YKR005C.

Predicted Domain #1
Region A:
Residues: [1-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDLDNCKCL QCALSSLNNS CFHDYCTSKD EYDKLQIVVE QFQLTNGVLD DGEILKPRGN  60
   61 KFSSRKLSYF VGQNNTLFRN PLQFEKNQLI SALLTSLTNN QKTISSVDMF EVVDANNEVQ 120
  121 YLRERTISGK TLSPATGYEE ENDGDCSVKD KKWEGKIEYH ENKKVSSENC SKDTDDKSGS 180
  181 KKERNTKAPL FHTATEIHMT RWSSWRPKKI FTRYLVNEYQ SPKIITTVNR FYRTKTDTET 240
  241 GTTLITSTKA KRRWFPRTKI VTSTATSTFL SITTTTTTNA IATKSLVAVL NPDGLNKKAG 300
  301 INFGLFSANG ELASPDEGGT PTVVRRDKIS DPGA

[Run NCBI BLAST on this sequence.]

Detection Method: ab initio
Confidence: 7.38
Match:
Description: No description for 1l2qA was found.

Predicted Domain #2
Region A:
Residues: [335-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANEQATLFST TFSQVPHLPE LDSGEFISAA SQLDKRIFIF TAITVSITTL MMLGFSYRSR  60
   61 VSFRDHSIDD SDDDNDWSDD EVEFDEEYFY SLPVSIPEKG ISLDKMAQQL GVE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.583 a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.575 d.15.6 Superantigen toxins, C-terminal domain
View Download 0.503 d.8.1 Urease, gamma-subunit
View Download 0.503 d.8.1 Urease, gamma-subunit
View Download 0.501 a.118.11 Cytochrome c oxidase subunit E
View Download 0.496 a.7.12 Description not found.
View Download 0.482 a.81.1 N-terminal domain of DnaB helicase
View Download 0.482 a.81.1 N-terminal domain of DnaB helicase
View Download 0.472 a.7.2 Enzyme IIa from lactose specific PTS, IIa-lac
View Download 0.441 a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle