Protein: | LOS1 |
Organism: | Saccharomyces cerevisiae |
Length: | 1100 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LOS1.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..1100] | [1..1100] |
|
0.0 | [14..1087] | [10..952] |
|
0.0 | [2..1099] | [3..976] |
|
0.0 | [17..843] | [13..757] |
|
2.0E-81 | [3..871] | [24..786] |
Region A: Residues: [1-434] |
1 11 21 31 41 51 | | | | | | 1 MLERIQQLVN AVNDPRSDVA TKRQAIELLN GIKSSENALE IFISLVINEN SNDLLKFYGL 60 61 STLIELMTEG VNANPNGLNL VKFEITKWLK FQVLGNKQTK LPDFLMNKIS EVLTTLFMLM 120 121 YSDCNGNQWN SFFDDLMSLF QVDSAISNTS PSTDGNILLG LEFFNKLCLM INSEIADQSF 180 181 IRSKESQLKN NNIKDWMRDN DIMKLSNVWF QCLKLDEQIV SQCPGLINST LDCIGSFISW 240 241 IDINLIIDAN NYYLQLIYKF LNLKETKISC YNCILAIISK KMKPMDKLAF LNMINLTNEL 300 301 TYYHQAISMN PQIITFDNLE VWESLTKLIT SFGIEFTIII EQVNDDQKLD TLYKQSVISN 360 361 VDSILLEKII PILLEFMNNE FDSITAKTFP FWSNYLAFLK KYKASSPNFV PLHKDFLDNF 420 421 QQICFKRMKF SDDE |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [435-516] |
1 11 21 31 41 51 | | | | | | 1 VTQDDFEEFN ETVRFKLKNF QEIIVVIDPS LFLNNISQEI SANLMNCKNE SWQIFELTIY 60 61 QIFNLSECTK NNYFGLNKNE IM |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
View | Download | 0.917 | 0.008 | tRNA splicing, via endonucleolytic cleavage and ligation | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
Region A: Residues: [517-1100] |
1 11 21 31 41 51 | | | | | | 1 TSQPSLTLVR FLNELLMMKD FLLAIDNEQI QILFMELIVK NYNFIFSTSA NTANATDDDE 60 61 KYLLILNIFM SSFAMFNKRE NVRLRSWYLF TRFLKLTRIN LKKILFANKN LVNEITNKIS 120 121 PLLHIKVTSI NAQGTDDNDT IFDNQLYIFE GIGFIITLNN SSQELTAATA NTPIDYDILD 180 181 QILTPLFTQL EGCITQGASP VVILECHHIL MAIGTLARGL HIGLVPENQV NNMVVNKKLI 240 241 NDSLIHKFSN IAEVILVTFS FFNKFENIRD ASRFTFARLI PILSNKILPF INKLIELILS 300 301 STDLKSWEMI DFLGFLSQLI HMFHTDTDCY QLFNQLLTPL INKVHSIIEE IDEQHDQQSS 360 361 SNKPIDTAVT ATSVNKNIVV TDSYRDKILL KKAYCTFLQS FTNNSVTSIL LSDINRAILP 420 421 VILNDLVTYT PQEIQETSMM KVSLNVLCNF IKCFGNGTCL DNDDINKDPN LKIDGLNEYF 480 481 IMKCVPIIFE IPFNPIYKFN IKEGNFKTMA YDLARLLREL FIVSSNPTTN ENECVKYLTQ 540 541 IYLPQIQLPQ ELTIQLVNML TTMGQKQFEK WFVDNFISVL KQGQ |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [1013-1100] |
1 11 21 31 41 51 | | | | | | 1 YKFNIKEGNF KTMAYDLARL LRELFIVSSN PTTNENECVK YLTQIYLPQI QLPQELTIQL 60 61 VNMLTTMGQK QFEKWFVDNF ISVLKQGQ |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.