YRC Public Data Repository - Protein Structure Prediction

Protein:	EBP2
Organism:	Saccharomyces cerevisiae
Length:	427 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EBP2.

Description	E-value	Query Range	Subject Range
EBP2 - Essential protein required for the maturation of 25S rRNA and 60S ribosomal subunit assembly, locali... EBP2_YEAST - rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EBP2 PE=1 S...	1.0E-76	[1..427]	[1..427]
EBP2_MOUSE - Probable rRNA-processing protein EBP2 OS=Mus musculus GN=Ebna1bp2 PE=2 SV=1	2.0E-72	[141..426]	[2..292]
gi\|61362040, gi\|... - gi\|61362040\|gb\|AAX42147.1\| EBNA1 binding protein 2 [synthetic construct], gi\|61362036\|gb\|AAX42146.1\|... EBNA1BP2 - EBNA1 binding protein 2	2.0E-71	[141..426]	[2..292]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-68	[131..405]	[132..438]
EBP2_XENLA - Probable rRNA-processing protein EBP2 OS=Xenopus laevis GN=ebna1bp2 PE=2 SV=1	3.0E-61	[139..422]	[3..291]
CG13185-PB - This gene is referred to in FlyBase by the symbol Dmel\CG13185 (CG13185, FBgn0033661). It is a prote...	5.0E-57	[7..369]	[4640..5010]
ebp2 - rRNA processing protein Ebp2 EBP2_SCHPO - Probable rRNA-processing protein ebp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ebp2...	9.0E-55	[131..425]	[22..330]
EBP2_ARATH - Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis thaliana GN=At3g22660 PE=2 SV=1	2.0E-50	[153..417]	[4..291]

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Predicted Domain #1

Region A:
Residues: [1-6]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGFK

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [229-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDEHIKDIYD DTERELAFYK QSLDAVLVAR DELKRLKVPF KRPLDYFAEM VKSDEHMDKI  60
   61 KGKLIEEASD KKAREEARRQ RQLKKFGKQV QNATLQKRQL EKRETLEKIK SLKNKRKHN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.86
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #2

Region A:
Residues: [7-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKELLSHQKE IEKAEKLEND LKKKKSQELK KEEPTIVTAS NLKKLEKKEK KADVKKEVAA  60
   61 DTEEYQSQAL SKK

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.86
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #3

Region A:
Residues: [80-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKRKLKKELK KMQEQDATEA QKHMSGDEDE SGDDREEEEE EEEEEEGRLD LEKLAKSDSE  60
   61 SEDDSESEND SEEDEDVVA

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.86
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #4

Region A:
Residues: [159-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KEESEEKEEQ EEEQDVPLSD VEFDSDADVV PHHKLTVNNT KAMKHALERV QLPWKKHSFQ  60
   61 EHQSVTSETN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	10.86
Match:	1l8mA
Description:	No description for 1l8mA was found.

Predicted Domain #5

Region A:
Residues: [348-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIDHSEFNVG VEEEVEGKRF DRGRPNGKRA AKNAKYGQGG MKRFKRKNDA TSSADVSGFS  60
   61 SRKMKGKTNR PGKSRRARRF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits