YRC Public Data Repository - Protein Structure Prediction

Protein:	RPT1
Organism:	Saccharomyces cerevisiae
Length:	467 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPT1.

Description	E-value	Query Range	Subject Range
gi\|18159541, gi\|... - gi\|18312110\|ref\|NP_558777.1\| AAA family ATPase, CDC48 subfamily protein [Pyrobaculum aerophilum str....	0.0	[1..466]	[250..710]
Y1297_ARCFU - Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 ... Y1297_ARCFU, YC9... - (O28972) Cell division cycle protein 48 homolog AF1297, Cell division cycle protein 48 homolog AF_12...	0.0	[1..467]	[253..729]
gi\|15920392, gi\|... - gi\|15920392\|ref\|NP_376061.1\| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7], gi\|15621174\|d...	0.0	[1..466]	[183..670]
gi\|5106179, gi\|1... - gi\|5106179\|dbj\|BAA81490.1\| 699aa long hypothetical transitional endoplasmic reticulum ATPase [Aeropy... gi\|7435761 - pir\|\|B72479 probable transitional endoplasmic reticulum ATPase APE2474 - Aeropyrum pernix (strain K1...	0.0	[1..466]	[221..679]
gi\|13813572, gi\|... - gi\|15897351\|ref\|NP_341956.1\| AAA ATPase family protein [Sulfolobus solfataricus P2], gi\|13813572\|gb\|... gi\|25289959 - pir\|\|C90186 AAA family ATPase [imported] - Sulfolobus solfataricus	0.0	[1..462]	[272..756]
YB56_METJA, Y115... - (Q58556) Cell division cycle protein 48 homolog MJ1156, Cell division cycle protein 48 homolog MJ115... Y1156_METJA - Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / ...	0.0	[1..435]	[250..676]
SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIM... SAV_SULAC - Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2	0.0	[1..466]	[283..771]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPKEDWEKY KAPLEDDDKK PDDDKIVPLT EGDIQVLKSY GAAPYAAKLK QTENDLKDIE  60
   61 ARIKEKAGVK ESDTGLAPSH LWDIMGDRQR LGEEHPLQVA RCTKIIKGNG ESDETTTDNN 120
  121 N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	608.37734
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [122-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGNSNSNSNQ QSTDADEDDE DAKYVINLKQ IAKFVVGLGE RVSPTDIEEG MRVGVDRSKY  60
   61 NIELPLPPRI DPSVTMMTVE EKPD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	608.37734
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [206-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTYSDVGGCK DQIEKLREVV ELPLLSPERF ATLGIDPPKG ILLYGPPGTG KTLCARAVAN  60
   61 RTDATFIRVI GSELVQKYVG EGARMVRELF EMARTKKACI IFFDEIDAVG GARFDDGAGG 120
  121 DNEVQRTMLE LITQLDGFDP RGNIKVMFAT NRPNTLDPAL LRPGRIDRKV EFSL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	608.37734
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [380-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDLEGRANIF RIHSKSMSVE RGIRWELISR LCPNSTGAEL RSVCTEAGMF AIRARRKVAT  60
   61 EKDFLKAVDK VISGYKKFSS TSRYMQYN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	608.37734
Match:	1e32A_
Description:	Membrane fusion atpase p97 N-terminal domain , P97-Nn; Membrane fusion atpase p97, D1 domain; Membrane fusion atpase p97 domain 2, P97-Nc
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits