YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CMC1
Organism: Saccharomyces cerevisiae
Length: 103 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CMC1.

Description E-value Query
Range
Subject
Range
CMC1 - Evolutionarily conserved copper-binding protein of the mitochondrial intermembrane space, may be inv...
COXM1_YEAST - COX assembly mitochondrial protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CMC1 ...
COXM1_YEAS7 - COX assembly mitochondrial protein OS=Saccharomyces cerevisiae (strain YJM789) GN=CMC1 PE=3 SV=2
155.0 [0..1] [103..9]
gi|42733871 - gi|42733871|gb|AAS38788.1| hypothetical protein [Dictyostelium discoideum]
136.0 [0..13] [103..25]
Y5933_DICDI - Uncharacterized protein DDB_G0275933 OS=Dictyostelium discoideum GN=DDB_G0275933 PE=3 SV=1
gi|60471761, gi|... - gi|66819950|ref|XP_643632.1| hypothetical protein [Dictyostelium discoideum AX4], gi|60471761|gb|EAL...
133.0 [0..13] [103..25]
gi|26453126, gi|... - gi|9755652|emb|CAC01805.1| hypothetical protein [Arabidopsis thaliana], gi|28416801|gb|AAO42931.1| A...
110.0 [0..17] [88..16]
gi|90657614 - gi|90657614|gb|ABD96913.1| hypothetical protein [Cleome spinosa]
100.0 [0..17] [90..15]
gi|49524808 - gi|49524808|emb|CAG58414.1| unnamed protein product [Candida glabrata]
gi|50286149, gi|... - gi|50286149|ref|XP_445503.1| unnamed protein product [Candida glabrata], gi|49524808|emb|CAG58414.1|...
98.0 [0..3] [101..7]
gi|45198719, gi|... - gi|45198719|ref|NP_985748.1| AFR201Cp [Ashbya gossypii ATCC 10895], gi|44984729|gb|AAS53572.1| AFR20...
gi|44984729 - gi|44984729|gb|AAS53572.1| AFR201Cp [Ashbya gossypii ATCC 10895]
90.0 [0..4] [97..10]
gi|49643635, gi|... - gi|50308989|ref|XP_454500.1| unnamed protein product [Kluyveromyces lactis], gi|49643635|emb|CAG9958...
gi|49643635 - gi|49643635|emb|CAG99587.1| KLLA0E12233p [Kluyveromyces lactis]
89.0 [0..2] [101..5]
gi|125543171 - gi|125543171|gb|EAY89310.1| hypothetical protein OsI_10813 [Oryza sativa Indica Group]
gi|108707263, gi... - gi|215737178|dbj|BAG96107.1| unnamed protein product [Oryza sativa Japonica Group], gi|215712326|dbj...
86.0 [0..17] [88..15]

Back

Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISKHSSRLP IWVLSPREEQ QARKNLKTET YKKCANFVQA MADCAKANGM KVFPTCDKQR  60
   61 DEMKSCLLFY QTDEKYLDGE RDKIVLEKIN KLEKLCQKQS STK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.966 a.8.3 Families 57/38 glycoside transferase middle domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle