YRC Public Data Repository - Protein Structure Prediction

Protein:	CYT2
Organism:	Saccharomyces cerevisiae
Length:	224 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYT2.

Description	E-value	Query Range	Subject Range
CYT2 - Cytochrome c1 heme lyase, involved in maturation of cytochrome c1, which is a subunit of the mitocho... gi\|207343541 - gi\|207343541\|gb\|EDZ70977.1\| YKL087Cp-like protein [Saccharomyces cerevisiae AWRI1631] CYT2_YEAST - Cytochrome c1 heme lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYT2 PE=3 SV=1 gi\|190409743 - gi\|190409743\|gb\|EDV13008.1\| cytochrome c1 heme lyase [Saccharomyces cerevisiae RM11-1a]	2.0E-96	[1..224]	[1..224]
cchl-1 - cyctochrome c1 heme lyase status:Confirmed UniProt:P53703 protein_id:CAA88969.1	2.0E-78	[1..224]	[27..264]
SPAC24C9.02c - cytochrome c1 heme lyase YE42_SCHPO - Putative cytochrome c1 heme lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24C9...	3.0E-69	[2..220]	[6..205]
CCHL_NEUCR - Cytochrome c heme lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257... CCHL_NEUCR - Cytochrome c heme lyase OS=Neurospora crassa GN=cyt-2 PE=3 SV=1	5.0E-65	[8..223]	[65..328]
CCHL_CANAL - Cytochrome c heme lyase OS=Candida albicans GN=CYC3 PE=3 SV=1	1.0E-63	[8..219]	[24..248]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSSDQQGKC PVDEETKKLW LREHGNEAHP GATAPGNQLE CSANPQDNDK TPEYHTTVDL  60
   61 SQSREVSTIP RTNSDRNWIY PSEKQFYEAM MKKNWDPNSD DMKVVVPLHN SINERVWNYI 120
  121 KSWEDKQGGE ACGGIKLTNF KGDSKKLTPR AWFRSRILHL AKPFDRHDWQ IDRCGKTVDY 180
  181 VIDFYSTDLN DANSQQQPLI YLDVRPKLNS FEGFRLRFWK SLGF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	148.236572
Match:	PF01265
Description:	Cytochrome c/c1 heme lyase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits