YRC Public Data Repository - Protein Structure Prediction

Protein:	YKL077W
Organism:	Saccharomyces cerevisiae
Length:	392 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKL077W.

Description	E-value	Query Range	Subject Range
gi\|190409752 - gi\|190409752\|gb\|EDV13017.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YKL077W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|207343530 - gi\|207343530\|gb\|EDZ70968.1\| YKL077Wp-like protein [Saccharomyces cerevisiae AWRI1631] YKH7_YEAST - Uncharacterized protein YKL077W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL077W ...	0.0	[1..392]	[1..392]

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Predicted Domain #1

Region A:
Residues: [1-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFHDSILIF FSLASLYQHV HGARQVVRPK EKMTTSEEVK PWLRTVYGSQ KELVTPTVIA  60
   61 GVTFSEKPEE TPNPLKPWVS LEHDGRPKTI KPEINKGRTK KGRPDYSTYF KTVSSHTYSY 120
  121 EELKAHNMGP NEVFVEEEYI DEDDTYVSLN PIVRCTPNLY FNKGLAKDIR SEPFCTPYEN 180
  181 SRWKVDKTYF VTWYTRFFTD ENSGKVADKV RVHLSYVKEN PVEKGNYKRD IPATFFSSEW 240
  241 IDNDNGLMPV EVRDEWLQDQ FDRRIVVSVQ PIYISDEDFD PLQYGILLYI TKGSKVFKPT 300
  301 KEQLALDDAG ITNDQWYYVA LSIPTVVVVF FVFMYFFLYV NGKNRDFTDV TRKALNKKRR 360
  361 VLGKFSEMKK FKNMKNHKYT ELPSYKKTSK QN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [280-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPLQYGILLY ITKGSKVFKP TKEQLALDDA GITNDQWYYV ALSIPTVVVV FFVFMYFFLY  60
   61 VNGKNRDFTD VTRKALNKKR RVLGKFSEMK KFKNMKNHKY TELPSYKKTS KQN