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View Structure Prediction Details

Protein: STB6
Organism: Saccharomyces cerevisiae
Length: 766 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for STB6.

Description E-value Query
Range
Subject
Range
STB2_YEAST - Protein STB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STB2 PE=1 SV=2
STB2 - Protein that interacts with Sin3p in a two-hybrid assay and is part of a large protein complex with ...
0.0 [11..750] [86..832]

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Predicted Domain #1
Region A:
Residues: [1-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLEATHQKE NHLSPLASFI FPDFRALFNI GFNLYSNINY KEVDINGFEI YIVEQWAAQR  60
   61 KISTLITSYT GNLQDTISAV EVALPEDPEE WPCCLKKYHE ELLKFSSPKK TAKGTLFVTN 120
  121 LSSFKSTLNL LHVECGNLKK IWKNFKTNYD LKRLHCGGRS AQLLKKTPSA SIAKFAQLYK 180
  181 FPNSAFSHEI TSDFQQPSLQ NDNSSISSIE NIPVNHCPVV ELTTLVQISL SYFALFEYKK 240
  241 ERDGLLCNGT KQSLEKWWEI YGKRYHGIDK PKNETILGPT TVASLLSLVL TCYFKLMVED 300
  301 CMSAKDPFDE EEFYSGLYAF QKKYGLSKNN KQTSLDELTI DKLFEVSSKT SNKDIFKFKK 360
  361 VVKSTVQDMT GKGNFMHLSN EILTTDLDTL VKNIHGGSLG KLWKGRSASR KETCMVWERK 420
  421 TFLSFKFERG DPSLQLENNE LFYGTSVPSE QLTTSNKEDS DTQPTKRNS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [470-766]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IYDIANGSKS SLSISSMFCN YDETRYKSTN NLNRAYRGEY FRRNSIPFCN DGIHDTKKIS  60
   61 ADLNKIDGLY RCNSYSEVQN AIELWSLPFD SSVIRLARDL LKIQSLMSVQ RQLDEIRDGY 120
  121 LGKNSQRSYQ NDLMFRQSLN KLQEMCERCK RGSNEFHWEY GNMQNKQQIL ESEKKDMKSL 180
  181 SSKLKYNVRI LDRRVRDVEA SVDHFDRKLE DVRKKLLEQN NSKDISMALE SPCDKFEFDS 240
  241 FMDSIVQSQQ TKYEGLCFKI LDKKSLRKLK KEFWKWSTWT FDTFLYKNRP NKEKDTL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle