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View Structure Prediction Details

Protein: NUP100
Organism: Saccharomyces cerevisiae
Length: 959 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP100.

Description E-value Query
Range
Subject
Range
gi|18032249 - gi|18032249|gb|AAL56659.1|AF231130_1 NUP196 nucleoporin [Homo sapiens]
0.0 [78..955] [1..862]
NU100_YEAST - Nucleoporin NUP100/NSP100 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUP100 PE=1 SV...
NUP100 - Subunit of the nuclear pore complex (NPC) that is localized to both sides of the pore; contains a re...
0.0 [1..959] [1..959]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
1.0E-79 [88..955] [5..905]
nup189 - nucleoporin Nup189
NU189_SCHPO - Nucleoporin nup189 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup189 PE=1 SV=1
4.0E-64 [1..955] [1..933]
NU98B_ARATH - Nuclear pore complex protein NUP98B OS=Arabidopsis thaliana GN=NUP98B PE=1 SV=1
2.0E-63 [1..955] [1..985]

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Predicted Domain #1
Region A:
Residues: [1-752]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGNNRPMFG GSNLSFGSNT SSFGGQQSQQ PNSLFGNSNN NNNSTSNNAQ SGFGGFTSAA  60
   61 GSNSNSLFGN NNTQNNGAFG QSMGATQNSP FGSLNSSNAS NGNTFGGSSS MGSFGGNTNN 120
  121 AFNNNSNSTN SPFGFNKPNT GGTLFGSQNN NSAGTSSLFG GQSTSTTGTF GNTGSSFGTG 180
  181 LNGNGSNIFG AGNNSQSNTT GSLFGNQQSS AFGTNNQQGS LFGQQSQNTN NAFGNQNQLG 240
  241 GSSFGSKPVG SGSLFGQSNN TLGNTTNNRN GLFGQMNSSN QGSSNSGLFG QNSMNSSTQG 300
  301 VFGQNNNQMQ INGNNNNSLF GKANTFSNSA SGGLFGQNNQ QQGSGLFGQN SQTSGSSGLF 360
  361 GQNNQKQPNT FTQSNTGIGL FGQNNNQQQQ STGLFGAKPA GTTGSLFGGN SSTQPNSLFG 420
  421 TTNVPTSNTQ SQQGNSLFGA TKLTNMPFGG NPTANQSGSG NSLFGTKPAS TTGSLFGNNT 480
  481 ASTTVPSTNG LFGNNANNST STTNTGLFGA KPDSQSKPAL GGGLFGNSNS NSSTIGQNKP 540
  541 VFGGTTQNTG LFGATGTNSS AVGSTGKLFG QNNNTLNVGT QNVPPVNNTT QNALLGTTAV 600
  601 PSLQQAPVTN EQLFSKISIP NSITNPVKAT TSKVNADMKR NSSLTSAYRL APKPLFAPSS 660
  661 NGDAKFQKWG KTLERSDRGS STSNSITDPE SSYLNSNDLL FDPDRRYLKH LVIKNNKNLN 720
  721 VINHNDDEAS KVKLVTFTTE SASKDDQASS SI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [753-959]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AASKLTEKAH SPQTDLKDDH DESTPDPQSK SPNGSTSIPM IENEKISSKV PGLLSNDVTF  60
   61 FKNNYYISPS IETLGNKSLI ELRKINNLVI GHRNYGKVEF LEPVDLLNTP LDTLCGDLVT 120
  121 FGPKSCSIYE NCSIKPEKGE GINVRCRVTL YSCFPIDKET RKPIKNITHP LLKRSIAKLK 180
  181 ENPVYKFESY DPVTGTYSYT IDHPVLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle