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View Structure Prediction Details

Protein: YNK1
Organism: Saccharomyces cerevisiae
Length: 153 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNK1.

Description E-value Query
Range
Subject
Range
NDK_CHICK - Nucleoside diphosphate kinase OS=Gallus gallus PE=2 SV=1
2.0E-72 [1..153] [1..153]
gi|1421613, gi|1... - gi|206581883|pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor Complex With ...
8.0E-72 [3..153] [1..151]
NDK_COLLI - Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2
1.0E-71 [1..153] [1..153]
NDKB_RAT - Nucleoside diphosphate kinase B OS=Rattus norvegicus GN=Nme2 PE=1 SV=1
2.0E-71 [3..153] [2..152]
NDKA2_XENLA - Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1
2.0E-71 [1..153] [1..153]
NDKB_MOUSE - Nucleoside diphosphate kinase B OS=Mus musculus GN=Nme2 PE=1 SV=1
3.0E-71 [3..153] [2..152]
gi|10180968 - gi|10180968|gb|AAG14350.1|AF283993_1 putative oncoprotein nm23 [Ictalurus punctatus]
8.0E-71 [1..153] [1..153]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQTERTFI AVKPDGVQRG LVSQILSRFE KKGYKLVAIK LVKADDKLLE QHYAEHVGKP  60
   61 FFPKMVSFMK SGPILATVWE GKDVVRQGRT ILGATNPLGS APGTIRGDFG IDLGRNVCHG 120
  121 SDSVDSAERE INLWFKKEEL VDWESNQAKW IYE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 596.502279
Match: 1nueA_
Description: Nucleoside diphosphate kinases
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle