YRC Public Data Repository - Protein Structure Prediction

Protein:	YKL063C
Organism:	Saccharomyces cerevisiae
Length:	167 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKL063C.

Description	E-value	Query Range	Subject Range
gi\|190409766 - gi\|190409766\|gb\|EDV13031.1\| hypothetical protein SCRG_03957 [Saccharomyces cerevisiae RM11-1a] YKG3_YEAST - Uncharacterized protein YKL063C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL063C ... YKL063C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th... gi\|151941483 - gi\|151941483\|gb\|EDN59846.1\| conserved protein [Saccharomyces cerevisiae YJM789]	2.0E-67	[1..167]	[1..167]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGDIRRKKD LLPRYKTGSK YNSRRRGGYL TTPMKKIIVY IILLCGVYFV IKVAYSDLNK  60
   61 ETEIKLESHS SDVSASASDH TNIAAGGAAD ATNNKQPQQA KVPKEKFNNE VAKQQEVKNL 120
  121 ENDLKPQIDS EKQKQINKDK KEQKQQLQKE KQDLAKENLA NNEILDN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits