YRC Public Data Repository - Protein Structure Prediction

Protein:	MDM35
Organism:	Saccharomyces cerevisiae
Length:	86 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDM35.

Description	E-value	Query Range	Subject Range
gi\|49529225 - gi\|49529225\|emb\|CAG62891.1\| unnamed protein product [Candida glabrata] gi\|50295000, gi\|... - gi\|50295000\|ref\|XP_449911.1\| hypothetical protein CAGL0M13057g [Candida glabrata CBS138], gi\|4952922...	125.0	[0..1]	[85..1]
gi\|49641895, gi\|... - gi\|50305605\|ref\|XP_452763.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641895\|emb\|CAH0161... gi\|49641895 - gi\|49641895\|emb\|CAH01613.1\| KLLA0C12639p [Kluyveromyces lactis]	118.0	[0..1]	[83..1]
gi\|44980965, gi\|... - gi\|45185307\|ref\|NP_983024.1\| ABR078Cp [Ashbya gossypii ATCC 10895], gi\|44980965\|gb\|AAS50848.1\| ABR07... gi\|44980965 - gi\|44980965\|gb\|AAS50848.1\| ABR078Cp [Ashbya gossypii ATCC 10895]	116.0	[0..1]	[82..1]
orf19.12146, orf... - orf19.4676 CGDID:CAL0003791 Assembly 19, Contig19-10212 (219401, 219943) CDS, translated using codon... gi\|68466526, gi\|... - gi\|68466526\|ref\|XP_722745.1\| hypothetical protein CaO19.4676 [Candida albicans SC5314], gi\|68466233\|...	114.0	[0..1]	[77..92]
Y4331_ARATH - Uncharacterized protein At4g33100 OS=Arabidopsis thaliana GN=At4g33100 PE=3 SV=1	113.0	[0..7]	[83..14]
gi\|49654939 - gi\|49654939\|emb\|CAG87446.1\| DEHA2D18062p [Debaryomyces hansenii] gi\|50421443, gi\|... - gi\|50421443\|ref\|XP_459272.1\| hypothetical protein DEHA0D19591g [Debaryomyces hansenii CBS767], gi\|49...	106.0	[0..1]	[75..1]
YBAI_SCHPO - Uncharacterized protein C119.18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC119.18... SPBC119.18 - mitochondrial distribution and morphology protein Mdm35	101.0	[0..5]	[72..1]
ENSCJAT00000002143 - null TRIAP1 - TP53 regulated inhibitor of apoptosis 1 gi\|114647290 - gi\|114647290\|ref\|XP_001160868.1\| PREDICTED: p53-inducible cell-survival factor isoform 2 [Pan troglo... gi\|123992830, gi... - gi\|123999642\|gb\|ABM87362.1\| TP53 regulated inhibitor of apoptosis 1 [synthetic construct], gi\|123992...	97.0	[0..8]	[62..3]
gi\|61864019 - gi\|61864019\|ref\|XP_603511.1\| PREDICTED: similar to p53-inducible cell-survival factor [Bos taurus]	97.0	[0..8]	[62..17]
gi\|109496069, gi... - gi\|186910253\|ref\|NP_001119571.1\| TP53 regulated inhibitor of apoptosis 1 [Rattus norvegicus], gi\|149... TRIA1_MOUSE - TP53-regulated inhibitor of apoptosis 1 OS=Mus musculus GN=Triap1 PE=1 SV=1	96.0	[0..8]	[62..3]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNIMSASFA PECTDLKTKY DSCFNEWYSE KFLKGKSVEN ECSKQWYAYT TCVNAALVKQ  60
   61 GIKPALDEAR EEAPFENGGK LKEVDK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.853872
Match:	PF05254.3
Description:	No description for PF05254.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.843	N/A	N/A	f.34.1	Mechanosensitive channel protein MscS (YggB), transmembrane region

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits