YRC Public Data Repository - Protein Structure Prediction

Protein:	SFK1
Organism:	Saccharomyces cerevisiae
Length:	353 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFK1.

Description	E-value	Query Range	Subject Range
SFK1_YEAST - Protein SFK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFK1 PE=1 SV=1 SFK1 - Plasma membrane protein that may act together with or upstream of Stt4p to generate normal levels of...	0.0	[1..353]	[1..353]
SPCC16A11.01 - conserved fungal protein SFK1_SCHPO - Protein sfk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sfk1 PE=3 SV=1	2.0E-69	[8..283]	[19..228]
gi\|85099236 - gi\|85099236\|ref\|XP_960740.1\| hypothetical protein NCU03660 [Neurospora crassa OR74A] gi\|32404698, gi\|... - gi\|32404698\|ref\|XP_322962.1\| hypothetical protein ( (AL451013) conserved hypothetical protein [Neuro...	3.0E-54	[11..291]	[4..224]

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Predicted Domain #1

Region A:
Residues: [1-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQFKSPGNW LFIVPWIAFI PWYGMLIAML ICWASQGHPI YWFMHSEQFP VYISDIGATN  60
   61 LRPLFISCAG WQGLGYVITV ALEFFQRSGY LPFQLKKKDP SISDSTSYAE KLHSGKYLMP 120
  121 PYYTKDERNL IFAAFVLGSI GELALLFSSI FSTALYHRVH IAMVSVFVVF MFLSTCCLIA 180
  181 EYFLMGRHYA SVHPLASPHF NPQSSEKSFN QDYNTVDELP WYKWKGHVWN KFTISATLKV 240
  241 IWLTLAVVWA ICFGAINDRS KSACFEWLLA FWFGIIFMIL SADFYLGGRY RQSRYFNHVE 300
  301 SFSGYYKYDK ALGLYHSEDV LPSDDNAGVI ATETASSNIY NNSSSNESIQ VVV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [186-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRHYASVHPL ASPHFNPQSS EKSFNQDYNT VDELPWYKWK GHVWNKFTIS ATLKVIWLTL  60
   61 AVVWAICFGA INDRSKSACF EWLLAFWFGI IFMILSADFY LGGRYRQSRY FNHVESFSGY 120
  121 YKYDKALGLY HSEDVLPSDD NAGVIATETA SSNIYNNSSS NESIQVVV